BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905201
Length=483
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21730.1 | Symbols: FOLB3 | Dihydroneopterin aldolase | chr3... 749 0.0
AT3G11750.1 | Symbols: FOLB1 | Dihydroneopterin aldolase | chr3... 241 6e-63
> AT3G21730.1 | Symbols: FOLB3 | Dihydroneopterin aldolase | chr3:7659556-7661232
REVERSE LENGTH=741
Length=741
Score = 749 bits (405), Expect = 0.0
Identities = 457/483 (95%), Gaps = 0/483 (0%)
Strand=Plus/Plus
Query 1 ATGCATAGCTCACTGAAAACAACGGCTCCAGCAACGTTGGAACGGCTATGTATTCTCTTA 60
|||||||||||||||||||||| ||||||||||| ||||||||| |||||| |||||| |
Sbjct 54 ATGCATAGCTCACTGAAAACAATGGCTCCAGCAAAGTTGGAACGACTATGTGTTCTCTCA 113
Query 61 TTCTTTCTTTTTTGTGCAACAGTTCTTGGAACAGAATCATTGGAGCCATTGCATGAGGAT 120
|||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||
Sbjct 114 TTCTTTCTTTTTTGTGCAACAGTTTTTGGAACAGAATCATTGGAGTCATTGCCTGAGGAT 173
Query 121 AAACTGATACTGAGAGGGTTGAAATTTTACGGTTTCCATGGAGTGCTTCCAGAAGAGAAG 180
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 174 AAACTGATACTGAGAGGGTTGAAATTTTATGGTTTCCATGGAGTGCTTCCAGAAGAGAGG 233
Query 181 AAATTGGGGGGTCTGTTTACCGTTGACATTGATTTGTGGTTGAGTCTGAAAAAGGCCATT 240
||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 234 GAATTGGGTGGTCTGTTTATCGTTGACATTAATTTGTGGTTGAGTCTGAAAAAGGCCATT 293
Query 241 GAGTCAGACAACTTAGCAGATACAGTCAGCTTTGCCGATACTTTCAGCCTAGTGAAGAAA 300
|| ||||||||||||||||||||||| |||||||| |||||||| || ||||||||||||
Sbjct 294 GAATCAGACAACTTAGCAGATACAGTTAGCTTTGCTGATACTTTTAGGCTAGTGAAGAAA 353
Query 301 ATTGTTGAAGGGCCACCAAAAAACCTTTACGAGACGGTTGCGGATCACATAGCGTCTAAA 360
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||
Sbjct 354 ATTGTTGAAGGGCCACCAAGAAACCTTTACGAGACGGTTGCGGATGACATAGCGTCTGAA 413
Query 361 ATGCTTGAAACGTTTCCTAAGATAAACGTTATTCGAGTCAAGTTCGGAAAGCCAAATCCC 420
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 414 ATGCTTGAAACGTTTCCTAAGATAAATGTTATTCGAGTGAAGTTCGGAAAGCCAAATCCC 473
Query 421 TCACTAGTTAATAGCACCGTTGATTTCTTAGGTGCCGAGCTTTTCAGGAAGCGAAAGCAC 480
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 474 TCACTAGTTAATAGCACCGTTGATTTCTTAGGGGCCGAGCTTTTCAGGAAGCGAAATCAC 533
Query 481 TAA 483
|||
Sbjct 534 TAA 536
> AT3G11750.1 | Symbols: FOLB1 | Dihydroneopterin aldolase | chr3:3715071-3715904
REVERSE LENGTH=441
Length=441
Score = 241 bits (130), Expect = 6e-63
Identities = 294/371 (79%), Gaps = 19/371 (5%)
Strand=Plus/Plus
Query 121 AAACTGATACTGAGAGGGTTGAAATTTTACGGTTTCCATGGAGTGCTTCCAGAAGAGAAG 180
||||||||||| | ||||||||||||||||||||||||||||| | || | ||||| |||
Sbjct 67 AAACTGATACTAAAAGGGTTGAAATTTTACGGTTTCCATGGAGCGATTGCTGAAGA-AAG 125
Query 181 AA-ATTGGGGG-GTCTGTTTACC-GTTGACATTGATTTGTGGTTGAGTCTGAAAAAGGCC 237
| | ||||| | ||||| | |||||||||||| |||| ||||||||||||||||
Sbjct 126 GACACTGGGGCAGA-TGTTT-CTTGTTGACATTGATGCGTGGGTGAGTCTGAAAAAGGCT 183
Query 238 ATTGAGTCAGACAACTTAGCAGATACAGTCAGCTTTGCCGATACTTTCAGCCTAG-TGAA 296
||| ||||||||||||| ||||||| | |||| | ||| | ||||||||||| | ||
Sbjct 184 GGTGAATCAGACAACTTAGAAGATACAATTAGCTACGTCGACATTTTCAGCCTAGCT-AA 242
Query 297 GAAAATTGTTGAAGGGCCACCAAAAAACCTTTACGAGACGGTTGCGGATCACATAGCGTC 356
| |||||||||||||| |||||| |||||||| ||||| || ||||| | || || ||
Sbjct 243 GGAAATTGTTGAAGGGTCACCAAGAAACCTTTTGGAGACAGTCGCGGAACTTATTGCTTC 302
Query 357 TAAAATGCTTGAAACGTTTCC-TAAGATAAACGTTATTCGAGTCAAGTTCGGAAAGCCAA 415
|||| |||||||| || || | ||||||||| | ||||||| ||| || ||||||||
Sbjct 303 CAAAACGCTTGAAAAATT-CCATCAGATAAACGCTGTTCGAGTGAAGCTCTCAAAGCCAA 361
Query 416 ATCCCT-CACT-AGTTAATAGCACCGTTGATT-TCTTAGGTGCCGAGCTTTTCAGGA-AG 471
|| | |||| | |||| |||||| |||||| | ||||| | ||| | ||||| | ||
Sbjct 362 ATGT-TGCACTTA-TTAAGAGCACCATTGATTAT-TTAGGGGTCGATATATTCAG-ACAG 417
Query 472 CGAAAGCACTA 482
||||| |||||
Sbjct 418 CGAAA-CACTA 427
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23007239326
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5