BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905205

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G19820.1 | Symbols: LBD9 | LOB domain-containing protein 9 |...   483    7e-136


> AT2G19820.1 | Symbols: LBD9 | LOB domain-containing protein 9 
| chr2:8553543-8554040 REVERSE LENGTH=387
Length=387

 Score =  483 bits (261),  Expect = 7e-136
 Identities = 340/378 (90%), Gaps = 6/378 (2%)
 Strand=Plus/Plus

Query  1    ATGGATGCCTCCAGAGTCAATGTTAATCGTGCTCCTTGTGCTCTATGCACCACCAAAAAC  60
            ||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  12   ATGGATGTCTCGAGAGTCAATGTTAAACGTGCTCCTTGTGCTCTATGCACCACCAAAAAC  71

Query  61   AAAAGATGCCCCAAAAATTGTGAATTTGCACCATATTTCCCAGCAGAAA-AACTCGGTGA  119
            ||| | || |||||||| ||||| |||||||||||||| || || |||| ||   |||||
Sbjct  72   AAACGCTGTCCCAAAAAATGTGATTTTGCACCATATTTTCCTGCCGAAAGAAAA-GGTGA  130

Query  120  ATTTGAAAGTGCACATAAATTATTTGGTACACCAAATATTATGAAGATGATGAGGCTCGT  179
            || ||||| ||||||||| |||||||||||  |||||||||| |||||||||||| ||| 
Sbjct  131  ATATGAAAATGCACATAAGTTATTTGGTACGTCAAATATTATTAAGATGATGAGGTTCGC  190

Query  180  GTCCGAAGACGAAAACAAAG-GA-ATGTTGGCATCGTCCATACTCATGGAAGGTGATGCT  237
            |||| ||||| ||| ||||| || |||||||||||||||||||||||||||||||| |||
Sbjct  191  GTCCAAAGAC-AAA-CAAAGAGACATGTTGGCATCGTCCATACTCATGGAAGGTGACGCT  248

Query  238  TGGAAAAAGGATCCAGTGAGAGGTGGATTTGGTATTATCCAAAAATTAAAGTGGCAAATT  297
            |||||||| ||||||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct  249  TGGAAAAAAGATCCAGCGAGAGGTGGATTTGGAATGATCCAAAAATTAAAGTGGCAAATT  308

Query  298  GAACTACGCAAACTCTACCTCAATGAATTAAAGGAGAAGATTAAAGTTGAAAAGGAAAAA  357
            ||| |||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct  309  GAATTACGCAAAATCTACCTCAATGAACTAAAGGAGAAGATTAAAGTTGAAAAAGAAAAA  368

Query  358  ACTGAGCTCCGTCTTTAA  375
            || |||||||||||||||
Sbjct  369  ACAGAGCTCCGTCTTTAA  386



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17643979899


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5