BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905222

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G16550.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   527    4e-149


> AT5G16550.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5405350-5406887 
FORWARD LENGTH=1172
Length=1172

 Score =  527 bits (285),  Expect = 4e-149
 Identities = 330/351 (94%), Gaps = 5/351 (1%)
 Strand=Plus/Plus

Query  1    TCGATTTTGTTCCCAAATTCGAAAACTAGTGATGCGTCGTCTTCGTTTCTTGAACGTGTA  60
            |||||| |||| ||| ||||||||||  |||||  | |||||||||||||||||||||||
Sbjct  357  TCGATTCTGTTTCCAGATTCGAAAACCGGTGAT--G-CGTCTTCGTTTCTTGAACGTGTA  413

Query  61   AGAAACTCCGTCGCCGAAAATGGGCCTAAGCTTCGAGAAGCTTCTGAAAGAACAGGACGC  120
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  414  AGAAACTCCGTCGCTGAAAATGGGCCTAAGCTTCGAGAAGCTTCTGAAAGAACAGGACGC  473

Query  121  GAGATTCTTCTATGGACTCGTAGAAGCAGCTCGCTTCGTGCTCTGCTTGTCATCACTATG  180
            ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  474  GAGATTCTTCTCTGGACTCGTAGAGGCAGCTCGCTTCGTGCTCTGCTTGTCATCACTATG  533

Query  181  GGAACAATATTTCTTCTT-ACAACAATGGCTTTGGTTGTCTTCACACTCTTCTTTGTAGC  239
            ||||||||| ||||| || |||||||||||||||||||| ||||||||||||||||||||
Sbjct  534  GGAACAATAGTTCTT-TTGACAACAATGGCTTTGGTTGTATTCACACTCTTCTTTGTAGC  592

Query  240  TGCAACAGCTAATGCTATCATAATCTCTCTTCTGATTTCACTTGCTGTTGCTGGAGGCTT  299
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  593  TGCAACAGCCAATGCTATCATAATCTCTCTTCTGATTTCACTTGCTGTTGCTGGTGGCTT  652

Query  300  CTTGGCATTCTTCTTTCTTTGCTTGACTGGTATTTACATCGGAGCCTTATC  350
            ||||||| |||||||||| |||||||||||| ||||||| |||||||||||
Sbjct  653  CTTGGCACTCTTCTTTCTCTGCTTGACTGGTGTTTACATTGGAGCCTTATC  703



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23760751531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5