BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905233
Length=1038
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22100.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 652 0.0
> AT3G22100.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:7783711-7784469 REVERSE LENGTH=759
Length=759
Score = 652 bits (353), Expect = 0.0
Identities = 664/800 (83%), Gaps = 78/800 (10%)
Strand=Plus/Plus
Query 256 TTT-GACTCGCTCACTGAGTTACCACCGCTTCCTCCTTCCGATTTCACTCCCTCTT-C-C 312
||| ||||| |||||||| |||||||||||||||||||||||||||||||| || | |
Sbjct 21 TTTCGACTCACTCACTGACTTACCACCGCTTCCTCCTTCCGATTTCACTCCTTCCAACGC 80
Query 313 -TTCACCTTCTCCGACCACCAac-tcgacttgtctctctctcatgctgactcgctctttc 370
||||||||| |||||||| ||| ||||||| || || || | | | ||||| |
Sbjct 81 CTTCACCTTCCCCGACCAC-AACCTCGACTTTTC-CT-TC-C-T-C-GACTC-C------ 126
Query 371 tcgactcaacactgtctctcctcAATCGTCACCACCTCACTGAGTCAACTCGCCTCGAAC 430
|||| |||||||||||||||| ||||| ||| ||||||| |||||| | ||||
Sbjct 127 ---ACTC-----TGTCTCTCCTCAATCGGCACCATCTCTCTGAGTCCACTCGCTTGGAAC 178
Query 431 ATCTCTTTTACGACTCCACTCA------GCTCTTTCAAAACGACCTCGCCACCACCAC-A 483
| | ||||||||||||||||| ||||||||| |||||| | |||||||||| |
Sbjct 179 AGATTTTTTACGACTCCACTCACACTCAGCTCTTTCACAACGACGACACCACCACCACCA 238
Query 484 --ACACCGTTTCTTCAC-TTACCCGATCTAAAATCCATCGAACAACCACCCGCCGTGGAA 540
||||||||||| ||| || || ||||| ||||||||||| | ||||| |||
Sbjct 239 CCACACCGTTTCTCCACCTT-CCTGATCTCAAATCCATCGA-C--------GCCGTTGAA 288
Query 541 GAAGAACCGACGACGATGAAGctctttccatctctctctcctcctcttcctcttccCGAC 600
||| ||||||||||||||||| |||||||||||||||||||||||||| | || | |
Sbjct 289 GAA---CCGACGACGATGAAGCTGTTTCCATCTCTCTCTCCTCCTCTTCC-CG-CC-G-C 341
Query 601 GCTAAACGTCGCAAGAAGCTTAACTCGTA-TTCCTCTTCAACAAACTCCGGATCTCCAAC 659
| ||||||| | |||||||||||| | |||||||||||||| ||| |||||||||||
Sbjct 342 -C-AAACGTC--A-GAAGCTTAACTCA-ACTTCCTCTTCAACAACCTCTGGATCTCCAAC 395
Query 660 AGCGTCATCATCAAACACAAACGACGGTGGTACTGGTATTACCAAACGAAAGAAGATCTC 719
|||||| | | | |||||||||| | ||||||||||||| |||||||||
Sbjct 396 TGCGTCA--A--A--C------GACGGTGGTA-T--TATTACCAAACGACGGAAGATCTC 440
Query 720 TGACAAAATCAGATCCTTGGAGAAACTTATGCCATGGGAAAACAAA-ATGAGTTTAGCGA 778
||||||||||||||| |||||||||| ||||| ||||| | ||| |||| |||||||
Sbjct 441 AGACAAAATCAGATCCCTGGAGAAACTCATGCCGTGGGAGAG-AAAGATGAACTTAGCGA 499
Query 779 TGATTCTAGAAGAATCTCACAGATACATCAAGTTTCTTCAATCTCAAATTGCTTCACTCA 838
||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 500 TGACTCTAGAAGAATCTCACAAATACATCAAGTTTCTTCAATCTCAGATTGCTTCACTCC 559
Query 839 GTTGGATGCCTCTTGAATCTGTCTACAACACCGCCGGAGAAGTAGGAGAATCCGATTTGC 898
||||||||||||| ||||||||||||||||||||||| |||||||||||| | |||||||
Sbjct 560 GTTGGATGCCTCTCGAATCTGTCTACAACACCGCCGGTGAAGTAGGAGAAACAGATTTGC 619
Query 899 TCAAATCGCTAACACGTCAACAGATTCTTCAAGTTATTGCGAATTCTCCAGGTTCACGAA 958
||||||| || |||||||||||||||||||| ||| |||||||||||||||| |||||||
Sbjct 620 TCAAATCTCTGACACGTCAACAGATTCTTCAGGTTCTTGCGAATTCTCCAGGCTCACGAA 679
Query 959 ACGTACTTTCCTCTCATGGTGTTTGTGTCTTCTCTTACGAACAGCTTCTTTCTCTCAAGA 1018
||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 680 ACGTACTCTCCTCTCGTGGTGTTTGTGTCTTCTCTTATGAACAGCTTCTCTCTCTCAAGA 739
Query 1019 CAATGTCGAGAAACTTCTGA 1038
|||||||||||||| |||||
Sbjct 740 CAATGTCGAGAAACCTCTGA 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50887190911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5