BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905243

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G29180.2 | Symbols: RHS16 | root hair specific 16 | chr4:143...   115    3e-25
  AT3G25495.1 | Symbols:  | pseudogene of leucine-rich repeat pro...   110    1e-23


> AT4G29180.2 | Symbols: RHS16 | root hair specific 16 | chr4:14385593-14389689 
FORWARD LENGTH=2945
Length=2945

 Score =  115 bits (62),  Expect = 3e-25
 Identities = 110/130 (85%), Gaps = 16/130 (12%)
 Strand=Plus/Plus

Query  261   GAAAG-AAAATGAGTGTATTCAGGAGCTTATTCAGGACCACTTCTGCCTTCGGGAAAGAG  319
             ||||| ||||| | ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1644  GAAAGCAAAAT-AATGTATTCAGGAGCATATTCAGGACCACTTCTGCCTTCGGGAAAGAG  1702

Query  320   AAGGTTCACAT---GT-A-G-CA-T--TA--A-AAACAACTTCAA-AA-GTGATCGGTAA  365
             |||||||||||   || | | |  |  ||  | |||||||||||| || ||||| |||||
Sbjct  1703  AAGGTTCACATATAGTGAAGTCTCTAGTATTACAAACAACTTCAATAAAGTGATTGGTAA  1762

Query  366   AGGAGGGTTT  375
             ||||||||||
Sbjct  1763  AGGAGGGTTT  1772


> AT3G25495.1 | Symbols:  | pseudogene of leucine-rich repeat protein 
| chr3:9244325-9250768 FORWARD LENGTH=6444
Length=6444

 Score =  110 bits (59),  Expect = 1e-23
 Identities = 72/78 (92%), Gaps = 2/78 (3%)
 Strand=Plus/Plus

Query  168   GAATTT-AAAAGAAGATAACTTGACTGGGTTTGTCCCAAGATCTCTTAGGAAAAGAACAA  226
             |||||| ||||||| ||||||||||||||||||||||||||||||  |||||||||||||
Sbjct  4087  GAATTTGAAAAGAA-ATAACTTGACTGGGTTTGTCCCAAGATCTCACAGGAAAAGAACAA  4145

Query  227   TGGCTAGTGGACTTGCAC  244
             | ||||||| ||||||||
Sbjct  4146  TTGCTAGTGAACTTGCAC  4163



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17643979899


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5