BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905254
Length=219
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22240.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 361 2e-99
AT3G22235.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 235 1e-61
> AT3G22240.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G22235.2);
Has 177 Blast hits to 177 proteins in 14 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7863616-7864819
REVERSE LENGTH=535
Length=535
Score = 361 bits (195), Expect = 2e-99
Identities = 211/219 (96%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 1 ATGAATCCATCCGAGCAAAATCACTTTTCCGTGGAAAAACCTTCACAAACTTCGTCGGGG 60
||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 145 ATGAATCCATCCGAGCAGAATCACTTGTCCGTGGAAAAACCTTCACAGACTTCTTCGGGG 204
Query 61 CCGTACACAAGCCCACCACCGATTGGTTATCCGACCAGAGATGCGATGGTTGGTGATCCT 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 CCGTACACAAGTCCACCACCGATTGGTTATCCGACCAGAGATGCGATGGTTGGTGATCCT 264
Query 121 CCAGCCGCTGCAGTGGAGACGAAGTCCAAGGGCGATGGTTTTTGGAAAGGATGTTGTGCT 180
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 265 CCAGCCGCCGCAGTGGAGACAAAGTCCAAGGGCGATGGTTTTTGGAAAGGATGTTGTGCT 324
Query 181 GCCATATGCTGCTGTTGTGTCCTGGACGCATGCTTCTGA 219
|||||||||||||||||||||||||| ||||||||||||
Sbjct 325 GCCATATGCTGCTGTTGTGTCCTGGATGCATGCTTCTGA 363
> AT3G22235.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: pathogen and circadian controlled 1 (TAIR:AT3G22231.1);
Has 122 Blast hits to 122 proteins in 11 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7854419-7855791
REVERSE LENGTH=670
Length=670
Score = 235 bits (127), Expect = 1e-61
Identities = 189/219 (86%), Gaps = 3/219 (1%)
Strand=Plus/Plus
Query 1 ATGAATCCATCCGAGCAAAATCACTTTTCCGTGGAAAAACCTTCACAAACTTCGTCGGGG 60
||||||| ||||| ||||||| ||||||||||| ||||||||||| | ||||| || |||
Sbjct 178 ATGAATCAATCCGCGCAAAATTACTTTTCCGTGCAAAAACCTTCAGAGACTTCATCAGGG 237
Query 61 CCGTACACAAGCCCACCACCGATTGGTTATCCGACCAGAGATGCGATGGTTGGTGATCCT 120
||||||||||| || ||||| |||||||||||||| ||||||||| |||| |||||||||
Sbjct 238 CCGTACACAAGTCCGCCACCAATTGGTTATCCGACTAGAGATGCGGTGGTGGGTGATCCT 297
Query 121 CCAGCCGCTGCAGTGGAGACGAAGTCCAAGGGCGATGGTTTTTGGAAAGGATGTTGTGCT 180
|| || || ||||||||||| || |||||||||| | | ||||||||||||||
Sbjct 298 CCGGCAGCAGCAGTGGAGACAAACTCCAAGGGCG-T-CAACCCCG-AAGGATGTTGTGCT 354
Query 181 GCCATATGCTGCTGTTGTGTCCTGGACGCATGCTTCTGA 219
|||||||||||||||||||||||||| ||||||||||||
Sbjct 355 GCCATATGCTGCTGTTGTGTCCTGGATGCATGCTTCTGA 393
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9802211055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5