BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905276
Length=1788
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22420.2 | Symbols: WNK2, ZIK3 | with no lysine (K) kinase 2... 1857 0.0
AT3G48260.1 | Symbols: WNK3 | with no lysine (K) kinase 3 | chr... 272 8e-72
> AT3G22420.2 | Symbols: WNK2, ZIK3 | with no lysine (K) kinase
2 | chr3:7946526-7949074 FORWARD LENGTH=2126
Length=2126
Score = 1857 bits (1005), Expect = 0.0
Identities = 1155/1229 (94%), Gaps = 4/1229 (0%)
Strand=Plus/Plus
Query 562 GGAACCCCTGAGTTTATGGCTCCAGAAGTGTATGATGAGGAATATAATGAGTTGGTTGAT 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GGAACCCCTGAGTTTATGGCTCCAGAAGTGTATGATGAGGAATATAATGAGTTGGTTGAT 843
Query 622 GTATATGCTTTTGGAATGTGTGTGTTGGAGATGGTTACTTTCGATTATCCGTATAGCGAA 681
|||||||||||||| |||||||||||||||||||||||||| |||||||| || || |||
Sbjct 844 GTATATGCTTTTGGCATGTGTGTGTTGGAGATGGTTACTTTTGATTATCCTTACAGTGAA 903
Query 682 TGTACTCACCCGGCACAAATCTACAAGAAAGTTACCTCGGGGAAAAAGCCTGAAGCTTTT 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TGTACTCACCCGGCACAAATCTACAAGAAAGTTACCTCGGGGAAAAAGCCTGAAGCTTTT 963
Query 742 TACTTAGTGAAGGACCCTGAGGTTCGTGAGTTTGTTGAGAAGTGTTTAGCTAGTGTGACG 801
|||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 964 TACTTAGTGAAGGATCCTGAGGTTCGTGAGTTTGTTGAGAAGTGTTTAGCTAACGTGACG 1023
Query 802 TGTAGGCTAACGGCATTGGAGCTTTTACAAGACCCTTTTCTACGAGAAGATAATGTGGAT 861
||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||
Sbjct 1024 TGTAGGCTAACGGCATTGGAGCTTTTACAAGACCCTTTTCTACAAGATGATAATATGGAT 1083
Query 862 GGATTTGATATGAGACCTATTGATTACTACAATGGTTATGATGAAACTGGTGTGTTCCTT 921
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 GGATTTGTTATGAGACCTATTGATTACTACAATGGTTATGATGAAACTGGTGTGTTCCTT 1143
Query 922 AGACAACCTTTGATTGATGATCCTCTTTACCATGATCAGTTTGAGTCGTCACAGATATGT 981
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 AGACATCCTTTGATTGATGATCCTCTTTACCATGATCAGTTTGAGTCGTCACAGATATGT 1203
Query 982 GAGATCGATCTTTTCGCTAACGATGATGAAGACCATGTCGACATTTCGATTAAAGGGAAG 1041
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1204 GAGATCGATCTTTTCGCTAACGATGATGAAGATCATGTCGACATTTCGATTAAAGGGAAG 1263
Query 1042 AGAAACGGCGATGATGGGATATTCTTGAGGCTTAGAATCTCCGATGCTGAAGGTAAAGTT 1101
|||||||| |||||||||||||||||||| |||||||| || ||||||||||||| ||||
Sbjct 1264 AGAAACGGTGATGATGGGATATTCTTGAGACTTAGAATATCTGATGCTGAAGGTATAGTT 1323
Query 1102 TCAATCATTTTCGGTAGGCTTAAGATCATTGGTCTTAAAACCGTAAAATGCTTTCGACTT 1161
|||||| |||||| ||| |||| ||||| |||||||||| ||||| | |||||||| ||
Sbjct 1324 TCAATCTTTTTCGATAGTTTTAAAATCATCGGTCTTAAAAACGTAACACGCTTTCGAGTT 1383
Query 1162 TTATGTAATGCAGGACGGATAAGGAACATTTACTTCCCGTTTGAGACAGCTATTGATACT 1221
|| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1384 TTGGGTAATGTAGGACGGATAAGGAACATTTACTTCCCGTTTGAGACGGCTATTGATACT 1443
Query 1222 GCATGGAGTGTAGCGGCTGAGATGGTATCTGAGCTCGACATAACGAATCAAGATGTTGCG 1281
|||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1444 GCATGGAGTGTAGCGGTTGAGATGGTGTCAGAGCTCGACATAACGAATCAAGATGTTGCG 1503
Query 1282 AAAATCGCAGAGATGATCGATGCAGAGATTGCTGCGTTGGTACCTGATTGGAAAACTGAT 1341
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| ||||
Sbjct 1504 AAAATCGCGGAGATGATCGATGCAGAGATTGCTGCATTGGTGCCTGATTGGAAAAATGAT 1563
Query 1342 ACAGAAAGTTCCTCAAA-TGTGaacaacaacaacaacaacaacaCTGCAGGATTCTGTGG 1400
|||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1564 ACAGAAAGTTCC-CAAAATGTAAACAACAACAAGAACAACAACACTGCAGGATTCTGTGG 1622
Query 1401 AGATTGTGCTTCAAACGGGTATATACAAGAGACTGTATCATCAGGAGAAAAATCTCATCA 1460
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623 AGAGTGTGCTTCAAACGGGTATATACAAGAGACTGTATCATCAGGAGAAAAATCTCATCA 1682
Query 1461 TCATCATCATGAGTTCGATAGTTCTGACGACAAGAGCTGTTCTTCGGTTCACGGTAGGTT 1520
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1683 TAATCATCATGAGTTCGATAGTTCTGAAGACAAGAGCTGTTCTTCGGTTCACGGTAGGTT 1742
Query 1521 TGCGGATATTTGGGGTTTGAGAGAATCATATTCTGATGATGGAGGAAAACAGAGCTCAAG 1580
||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1743 TGCGGATATGTGGGGTTTGCGAGAATCATATTCTGATGATGGAGAAAAACAGAGCTCAAG 1802
Query 1581 GAAAGTCAGAAGTGGGCGGTGGTCGGAGAATGAGATGAGACGAGAACTGAGATGGCTTAA 1640
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1803 GAAGGTTAGAAGTGGACGGTGGTCGGAGAATGAGATGAGACGAGAACTGAGATGGCTTAA 1862
Query 1641 GGCAAGGCATAGGATTCAGCTTATGAAAGTAAGAGGTCAAACGATATGCGATACACCGTT 1700
||||||||| | |||||| ||||||||| | |||||||||||||| ||||| |||||| |
Sbjct 1863 GGCAAGGCACAAGATTCAACTTATGAAAATGAGAGGTCAAACGATCTGCGAGACACCGAT 1922
Query 1701 GGAGATCTCTGTCACGCCGGGAAATTCA-TCTTCGCCGCCTCTTCTTTACAGGGCGATAT 1759
||||||||| | || ||||||| |||| | |||| ||||||||||||||||| ||||
Sbjct 1923 AGAGATCTCTCTTACACCGGGAACTTCAGT-TTCGTTACCTCTTCTTTACAGGGCTATAT 1981
Query 1760 CGCTTCCTGTGGATGCTGTGGATATGTGA 1788
| |||||||||||||| ||||||||||||
Sbjct 1982 CACTTCCTGTGGATGCCGTGGATATGTGA 2010
Score = 963 bits (521), Expect = 0.0
Identities = 550/564 (98%), Gaps = 2/564 (0%)
Strand=Plus/Plus
Query 1 ATGAATGGTGAAGAAAGCTTTGTAGAAGATTGCTCTGTTTTTGTTGAGATTGATCCTTCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 ATGAATGGTGAAGAAAGCTTTGTAGAAGATTGCTCTGTTTTTGTTGAGATTGATCCTTCT 186
Query 61 GGAAGATATGGAAGATACGATGAAGTACTTGGCAAAGGAGCTTCAAAGACAGTATACAGA 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 187 GGAAGATATGGAAGATACGATGAAATACTTGGCAAAGGAGCTTCAAAGACAGTATACAGA 246
Query 121 GCTTTTGATGAGTATGAAGGGATTGAAGTAGCATGGAACCAAGTAAAGCTTCGAAATTTC 180
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 247 GCATTTGATGAGTATGAAGGTATAGAAGTAGCATGGAACCAAGTAAAGCTTCGAAATTTC 306
Query 181 ACAAGGAATCCTGAGGAACTAGAGAAGTTTTTCAGAGAGATTCATCTTCTCAAGACTTTG 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 307 ACAAGGAATCCTGAGGAATTAGAGAAGTTTTTCAGAGAGATTCATCTTCTCAAGACTTTG 366
Query 241 AATCATCAAAACATTATGAAATTCTACACTTCTTGGGTTGATACCAACAATTTATCAATC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 AATCATCAAAACATTATGAAATTCTACACTTCTTGGGTTGATACCAACAATTTATCAATC 426
Query 301 AATTTTGTCACTGAACTCTTTACCTCTGGTACTCTTAGACAGTATAGGTTGAGACATAGA 360
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 427 AATTTTGTCACTGAACTCTTCACCTCTGGTACTCTCAGACAGTATAGGTTGAGACATAGA 486
Query 361 AGAGTGAATATTAGAGCAGTGAAGCAATGGTGCAAGCAGATTTTAAAAGGGCTTCTTTAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 AGAGTGAATATTAGAGCAGTGAAGCAATGGTGCAAGCAGATTTTAAAAGGGCTTCTTTAT 546
Query 421 CTT-CATAGTCGTTCTCCACCAATTATTCATAGAGATCTTAAATGTGATAACATTTTTAT 479
|| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 547 -TTACATAGTCGTTCTCCACCAATTATACATAGAGATCTCAAATGTGATAACATTTTCAT 605
Query 480 CAATGGAAACCAAGGTGAAGTCAAGATCGGCGACCTTGGACTCGCTGCGATTCTTCGTAA 539
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 606 CAATGGAAACCAAGGTGAAGTCAAGATCGGTGACCTTGGACTCGCTGCGATTCTTCGTAA 665
Query 540 ATCACATGCTGTTCGTTGCGTTGG 563
||||||||| ||||||||||||||
Sbjct 666 ATCACATGCCGTTCGTTGCGTTGG 689
> AT3G48260.1 | Symbols: WNK3 | with no lysine (K) kinase 3 | chr3:17873012-17875220
REVERSE LENGTH=1551
Length=1551
Score = 272 bits (147), Expect = 8e-72
Identities = 528/706 (75%), Gaps = 49/706 (7%)
Strand=Plus/Plus
Query 43 GTTGAGATTGATCCTTCTGGAAGATATGGAAGATACGATGAAGTACTTGGCAAAGGAGC- 101
|||||||||||||| |||| | ||||| | || | ||||| || |||||||||||
Sbjct 37 GTTGAGATTGATCCCACTGGTCGCTATGGCCGGTATAAAGAAGTTCTAGGCAAAGGAGCT 96
Query 102 TTCAAAGACAGTATACAGAGCTTTTGA-TGAGTATGAAGGGATTGAAGTAGCATGGAACC 160
|||||||| |||||||||||| ||||| | | |||||| || ||||| || |||||||
Sbjct 97 TTCAAAGA-AGTATACAGAGCATTTGACCAACT-TGAAGGAATCGAAGTGGCTTGGAACC 154
Query 161 AAGTAAAGCTT---CGA-AATTTCACAAGGAATCCTGAGGAACTAGAGAAGT-TTT--TC 213
|||| ||| || || || ||| | | | | ||||| |||| || ||| ||
Sbjct 155 AAGTTAAG-TTAGATGATAAATTCTGTA-G-CT-CAGAGGATTTAGA-TCGTCTTTACTC 209
Query 214 AGAGAGATTCATCTT-CTCAAGA-CTTTGAATCATCAAAA-CATTATGAAATTCTACACT 270
|| || |||| ||| ||||| | | || || || ||||| ||| || ||||||||||||
Sbjct 210 TGA-AG-TTCA-CTTACTCAAAACCCTT-AAACA-CAAAAGCATCATCAAATTCTACACT 264
Query 271 TCTTGGGTTGAT-ACCAACA-ATTTATCAATCAATTTTGTCACTGAACTCTTTACCTCTG 328
|||||| | ||| ||||||| | | | | |||||| | |||| ||| |||| || || |
Sbjct 265 TCTTGGATCGATCACCAACACA-TGA-CTATCAATCTCATCACCGAAGTCTTCACTTCCG 322
Query 329 GTACTCTTAGACAGTATAGGTTGAGACATAGAAGAGTGAAT-AT-T-AGAGCAGTGAAGC 385
| | |||||||||||| || || |||| ||| ||| | || | |||||| |||||
Sbjct 323 GAAATCTTAGACAGTACCGGAAGAAACAT--AAGTGTG-TTGATCTAAGAGCATTGAAGA 379
Query 386 AATGGTGCAA-GCAGATTTTAAAAGGGCTTCTTTATCTTCATAGTCGTTCTCCACCAATT 444
|||||| ||| |||||| ||| |||||||| ||||||| ||||| | | ||| || |
Sbjct 380 AATGGT-CAAGGCAGATCTTAGAAGGGCTTGTTTATCTACATAGCCATGATCCTCCTGTG 438
Query 445 ATTCATAGAGATCTTAAATGTGATAACATTTTTATCAATGGAAACCAAGGTGAAGTCAAG 504
|| ||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||
Sbjct 439 ATCCATAGAGATCTTAAATGTGATAACATTTTCATTAATGGGAACCAAGGTGAGGTCAAA 498
Query 505 ATCGGCGACCTTGGACTCGCTGCGATTCTTCGTAAATCACAT-GCTGT--TCGTTGCGT- 560
|| || || || || || || |||||||| | | | | | ||| | || | ||||
Sbjct 499 ATTGGAGATCTAGGGCTAGCCGCGATTCTGC--ACCGCGC-TCGCTCTGCTCATAGCGTC 555
Query 561 -T-GGAACCCCTGAGTTTATGGCTCCAGAAGTGTATGATGAGGAATATAATG-AGTTGGT 617
| ||||| ||||| |||||||| || ||| | ||||| ||||| ||||||| | ||| |
Sbjct 556 ATCGGAACTCCTGAATTTATGGCGCCGGAACTCTATGAAGAGGACTATAATGTACTTG-T 614
Query 618 TGATGTATATGCTTTTGGAATGTGTGTG-TTGGAGATGGTTACTTTCGATTATCCGTATA 676
||| | || || |||||||||||| || ||| || |||| ||||| || || ||||||
Sbjct 615 CGATATCTACGCGTTTGGAATGTGTTTGCTTG-AGCTGGTAACTTTTGAATACCCGTATT 673
Query 677 GCGAATGTACTCACCCGGCACAAATCTACAAGAAAGTTACCTCGGG 722
|||||| || | | || || || || | ||||||||| |||||
Sbjct 674 CCGAATGCACAAATGCTGCTCAGATTTATAGGAAAGTTACATCGGG 719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88453360290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5