BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905285
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22490.1 | Symbols: | Seed maturation protein | chr3:796968... 1147 0.0
AT3G22500.1 | Symbols: ATECP31 | Seed maturation protein | chr3... 704 0.0
> AT3G22490.1 | Symbols: | Seed maturation protein | chr3:7969681-7970843
REVERSE LENGTH=998
Length=998
Score = 1147 bits (621), Expect = 0.0
Identities = 735/791 (93%), Gaps = 4/791 (1%)
Strand=Plus/Plus
Query 1 ATGAGTCAAGAAGACCAACCAAAGCGGCCACAAGAGCCAGTCAAATACGGCGACGTTTTT 60
|||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 106 ATGAGTCAAGAAGAACAACCAAAGCGGCCACAAGAGCCAGTCACTTACGGTGACGTTTTT 165
Query 61 GAAGTCTCCGGTGAACTCGCTGATAAGCCTATAGCGCCTGAGGATGCAAACATGATGCAA 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 166 GAAGTCTCCGGTGAACTCGCTGATAAGCCTATAGCGCCGGAGGATGCAAACATGATGCAA 225
Query 121 GCCGCGGAGACACGGGTGTTTGGCCACACTCAAAAAGGCGGTGCAGCTGCCGTCATGCAG 180
|| ||||||||||| ||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 226 GCAGCGGAGACACGTGTGTTTGGCCACACTCAGAAAGGCGGTGCAGCGGCAGTCATGCAG 285
Query 181 TCTGCAGCCACTGCCAACAAACGCGGTGGCTTTGTCCAACCAGGTGACACAACTGACCTG 240
|||||||||||||| || |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 286 TCTGCAGCCACTGCTAATAAACGCGGTGGCTTTGTCCATCCAGGTGACACAACTGATCTC 345
Query 241 GCCGCCGAACGAGGTGTCACGGTGGCGCAAACTGACGTCCCTGGTGCACGTGTCACAACA 300
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 346 GCCGCTGAACGAGGCGTCACAGTGGCGCAAACTGACGTCCCTGGTGCACGTGTCACAACA 405
Query 301 GAATTCGTCGGTGGACAGGTCGTTGGACAATACGTTGAGCCGAGACCGGTGGCTACTGCT 360
||||||||||||||||||||||||||||||||||| ||||| || || ||||| |||||
Sbjct 406 GAATTCGTCGGTGGACAGGTCGTTGGACAATACGTCGAGCCTAGGCCAGTGGCGACTGCG 465
Query 361 GCAGCTACGGAAGCAGAAGCGGTGGGATTGAGTTTGCAAAGTGCGATCACAATTGGAGAA 420
||||||| ||||||||||| ||||| |||||||| |||||||| || || |||||||||
Sbjct 466 GCAGCTATGGAAGCAGAAGTTGTGGGTTTGAGTTTACAAAGTGCAATAACGATTGGAGAA 525
Query 421 GCATTGGAAGCAACTGTGCAAACCGCTGGAAACAAACCGGTAGATCAAAGCGACGCAGCA 480
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 526 GCATTGGAAGCGACTGTGCAAACCGCTGGAAACAAACCGGTGGATCAAAGCGACGCAGCA 585
Query 481 GCGATTCAAGCGGCTGAGGTTAGAGCTTCTGGCACTAATGTGATTGCTCCTGGTGGAATC 540
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 586 GCGATTCAAGCGGCAGAGGTTAGAGCTTGTGGCACTAATGTGATTGCTCCTGGTGGAATC 645
Query 541 GCTGCTTCAGCTCAATCCGCAGCGAATCACAATGCTACCGTAGACCGTGATGAGGATAAA 600
|| ||||| |||||||| ||||| |||||||| |||||| ||||||||||||||||||||
Sbjct 646 GCCGCTTCTGCTCAATCAGCAGCAAATCACAACGCTACCATAGACCGTGATGAGGATAAA 705
Query 601 ATCAAGCTCATTGATGTTTTGGCGGGTGCGAC-GGGTAAGTTAACCGCTGATAAAGCTGT 659
|||||||||||||||||||||||||||||||| ||| |||||| |||| |||||||||||
Sbjct 706 ATCAAGCTCATTGATGTTTTGGCGGGTGCGACCGGG-AAGTTAGCCGCAGATAAAGCTGT 764
Query 660 AACGAGGCAGGACGCAGAGGGAGTGGTGGGCGCTGAGCTGAGGAACAACCCTAATCTGTC 719
|| |||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||
Sbjct 765 GACCAGGCAGGACGCAGAGGGAGTGGTGAGCGCTGAGCTGAGGAACAATCCTAATTTGTC 824
Query 720 TACTCATCCC-GGTGGTGTATCGGCTTCTATTACCGCAGCCGCTAGGCTTAACGAGAGAG 778
|||||| ||| ||||||||| ||||||||||||| || ||||||||||||||||||||||
Sbjct 825 TACTCA-CCCTGGTGGTGTAGCGGCTTCTATTACTGCCGCCGCTAGGCTTAACGAGAGAG 883
Query 779 CTGATATATGA 789
|||||||||||
Sbjct 884 CTGATATATGA 894
> AT3G22500.1 | Symbols: ATECP31 | Seed maturation protein | chr3:7971625-7972907
REVERSE LENGTH=1108
Length=1108
Score = 704 bits (381), Expect = 0.0
Identities = 663/793 (84%), Gaps = 43/793 (5%)
Strand=Plus/Plus
Query 11 AAGACCAACCAAAGCGGCCACA-AGAGCCAGTCAAATACGGCGACGTTTTTGAAGTCTCC 69
|||| ||||||| | ||||| | |||||||||||||||||| ||||||||||||||||||
Sbjct 50 AAGAGCAACCAAGGAGGCCA-AGAGAGCCAGTCAAATACGGGGACGTTTTTGAAGTCTCC 108
Query 70 GGTGAACTCGCTGATAAGCCTATAGCGCCTGAGGATGCAAACATGATGCAAGCCGCGGAG 129
|||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||||
Sbjct 109 GGTGAACTCGCTGATAAGCCCATAGCACCTGAGGATGCAAAGATGATGCAATCCGCGGAG 168
Query 130 ACACGGGTGTTTGGCCACACTCAAAAAGGCGGTGCAGCTGCCGTCATGCAGTCTGCAGCC 189
|||| ||||| ||||| ||||| ||||||||| ||||||| |||||||| |||||||||
Sbjct 169 ACACATGTGTTCGGCCATACTCAGAAAGGCGGTCCAGCTGCGGTCATGCAATCTGCAGCC 228
Query 190 ACTGCCAACAAACGCGGTGGCTTTGTCCAACCAGGTGACACAACTGACCTGGCCGCCGAA 249
|| |||| | |||||||||||||||||| |||| ||||| |||||| || | ||| |||
Sbjct 229 ACCACCAATATACGCGGTGGCTTTGTCCATCCAGATGACAAAACTGAGCTTGTCGCTGAA 288
Query 250 CGAGGTGTCACGGTGGCGCAAACTGACGTCCCTGGTGCA-CGTGTCACAACAGAATTCGT 308
||||| | ||| |||| |||||| | ||||||| |||| | ||||||||| ||||||||
Sbjct 289 CGAGGCGCCACAGTGGAGCAAAC-G--GTCCCTGCTGCAAC-TGTCACAACCGAATTCGT 344
Query 309 CGGTGGACAGGTCGTTGGACAATACGTTGAGCCGAGACCG-GTGG-CTACTGCTGCAGC- 365
|||||||||||||||||||||| ||||||| ||||| | | || | | ||||||| ||
Sbjct 345 CGGTGGACAGGTCGTTGGACAACACGTTGAACCGAGGC-GTGTAGTCG-CTGCTGC-GCG 401
Query 366 TACGGAAGCAGAAGCGGTGGGATTGAGTTTGCAAAGTGCGATCACAATTGGAGAAGCATT 425
|||||| | |||||| | ||| |||||| | || || |||||||||||| |
Sbjct 402 TACGGACGAAGAAGC--T----TTG------CAAAGTACAATAACGATTGGAGAAGCACT 449
Query 426 GGAAGCAACTGTGCAA-ACCGCTGGAAACAAACCGGTAGATCAAAGCGACGCAGCAGCGA 484
||||||||||||| || || |||||||||||||| || |||||||||||||| |||||||
Sbjct 450 GGAAGCAACTGTG-AAGACAGCTGGAAACAAACCTGTGGATCAAAGCGACGCCGCAGCGA 508
Query 485 TTCAAGCGGCTGAGGTTAGAGCTTCTGGCACTAATGTGATTGCTCCTGG-TGGAATCGCT 543
|||||||||| ||| | |||||||| || || || || ||||||| | | |||| ||||
Sbjct 509 TTCAAGCGGCAGAGATGAGAGCTTCCGGTACCAACGTCATTGCTC-TAGCTGGAGTCGCC 567
Query 544 GCTTCAGCTCAATCCGCAGCGAATCACAATGCTACCGTAGACCGTGATGAG-GATAAAAT 602
|||||||||||||| |||||| ||||||| ||||||||||| ||||| ||| | |||||
Sbjct 568 GCTTCAGCTCAATCTGCAGCGGATCACAACGCTACCGTAGATCGTGACGAGAGG-AAAAT 626
Query 603 CAAGCT-CATTGATGTTTTGGCGGGTGC-G-ACGGGTAAGTTAACCGCTGATAAAGCTGT 659
|||||| | | ||||||||| ||||||| | | ||| |||||| | || || | ||||||
Sbjct 627 CAAGCTTCGT-GATGTTTTGACGGGTGCAGCA-GGG-AAGTTATCGGCAGACAGAGCTGT 683
Query 660 AACGAGGCAGGACGCAGAGGGAGTGGTGGGCGCTGAGCTGAGGAACAACCCTAA-TCTGT 718
|||||| | || || |||||||||||| |||| ||| ||||||| |||||||| | |||
Sbjct 684 GACGAGGGAAGATGCCGAGGGAGTGGTGAGCGCAGAGATGAGGAATAACCCTAAAT-TGT 742
Query 719 CTACTCATCCC-GGTGGTGTATCGGCTTCTATTACCG-CAGCCGCTAGGCTTAACGAGAG 776
|||||| ||| ||||||||| |||||||| |||||| | || |||||||||||||||||
Sbjct 743 GTACTCA-CCCTGGTGGTGTAGCGGCTTCTCTTACCGTC-GCTGCTAGGCTTAACGAGAG 800
Query 777 AGCTGATATATGA 789
|| ||||||||||
Sbjct 801 AGTTGATATATGA 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5