BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905293
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22590.1 | Symbols: PHP, CDC73 | PLANT HOMOLOGOUS TO PARAFIB... 1914 0.0
> AT3G22590.1 | Symbols: PHP, CDC73 | PLANT HOMOLOGOUS TO PARAFIBROMIN
| chr3:8003934-8005579 FORWARD LENGTH=1440
Length=1440
Score = 1914 bits (1036), Expect = 0.0
Identities = 1180/1250 (94%), Gaps = 7/1250 (1%)
Strand=Plus/Plus
Query 1 ATGGATCCTTTATCAGTGCTGAAAGATTTCACAATCCGAGGAGACGTTGATAAAATAGAG 60
|||||||| |||||||| |||||||| |||||||||||||||||| |||||||||| |||
Sbjct 66 ATGGATCCATTATCAGTCCTGAAAGAATTCACAATCCGAGGAGACATTGATAAAATCGAG 125
Query 61 CGAGTCGGAGCCAATTACAGATTCGGATCGGAATATTCGTTCCCATGCGCGACGGAGACG 120
|||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 126 AGAGTTGGAGCTAATTACAGATTCGGATCGGAATATTCGTTTCCATGCGCGACGGAGACT 185
Query 121 GCATACCGATCAAAAGGTGGAACTCTCTACACACTCGAAGCATTAGTTCACTATGTGAAG 180
|| |||||||||||| |||||| |||||||||||| ||||||||||| ||||| ||||||
Sbjct 186 GCGTACCGATCAAAAAGTGGAAGTCTCTACACACTAGAAGCATTAGTACACTACGTGAAG 245
Query 181 AATCAACATCTGAAGCACGGAGAGTATATGCAATCAACCGTCAAAAGCTCCGTCCCGGCG 240
|||||||| ||||| || |||||||||||||||||||| ||||||| ||| |||||||||
Sbjct 246 AATCAACAACTGAAACATGGAGAGTATATGCAATCAACAGTCAAAAACTCAGTCCCGGCG 305
Query 241 GTTACTTTACCAGATCGGAAACCTCTCCTCGATTACCTCACCGGAAGAGTCGCTTCTTCC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 GTTACTTTACCAGATCGGAAACCTCTCCTCGATTACCTCACCGGAAGAGTCGCTTCTTCA 365
Query 301 GATTCAATTGATTACCTTTTGCTTCAGCAGCAAAACGCACAGAGTCAGAAGCAGAACGAA 360
||||| ||||||| ||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 366 GATTCTATTGATTTCCTCTTGCTTCAACAGCAAAACGCACAGAGTCAGAAGCAGAACGAA 425
Query 361 GAGTATCGACCAGATCAAGATAATTCAGCGTTTGTGTCTCGTGAAAACGCGATTG-AGGA 419
|||||||||||||||||||| |||||||| ||||| || || ||||||||||||| | ||
Sbjct 426 GAGTATCGACCAGATCAAGACAATTCAGCTTTTGTATCGCGCGAAAACGCGATTGCA-GA 484
Query 420 TATGGAGGTTGAAGATTTCGGTAAATCCGGCGAAGATGTTGATTACATTATGCTGATACG 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 485 TATGGAGGTTGAAGATTTCGGTAAATCCGGTGAAGATGTTGATTACATTATGCTGATTCG 544
Query 480 ATCCAATGAACGGCCGTTGAAGAGCCGTGACGCGATTCTTCAGTGTAAGAA-CAGAGATT 538
|||||| ||||| || ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 545 ATCCAACGAACGTCCATTGAAGAGCCGTGACGCGATTCTTCAGTGTAAGAATC-GAGATT 603
Query 539 TTTATAGTGTGTTGGTGAATTCGACTAAAAGAGAAGAAGAGAGACAGAGGATTGAGTCTC 598
| ||||||||| |||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 604 TCTATAGTGTGCTGGTGAATTCTACCAAGAGAGAAGAAGAGAGACAGAGGATTGAGTCTC 663
Query 599 ATCAGAGGAAAGATGGATTAGTTGCTAAGAGTAGGTTAATGGGAGCTGAAGAGAGAGGTA 658
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 664 ATCAGAGGAAAGATGGATTAGTTGCTAAGAGTAGGTTAATGGGAGCTGAAGAAAGAGGTA 723
Query 659 TTGTAGGG-TT--TAGTGGTGGTGGTGATGATAATGGTTATGATGCTAATCCTAAATCTA 715
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 TTGTAGGGTTTAGTAGTGGTGGTGGTGATGATAATGGTTATGATGCTAATCCTAAATCTA 783
Query 716 AGCTTCATTTTAAAGCTGGGAAGATTGGAGAAGGCGTACCGATAATTCTTGTGCCGAGTG 775
|||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||||||
Sbjct 784 AGCTTCATTTTAAAGCTGGGAAGATTGGTGAAGGTGTGCCGATTATTCTTGTCCCGAGTG 843
Query 776 CGTCTCAGACGTTGATTACTATATATAATGTTAAAGAGTTTCTTGAAGATGGTGTTTATA 835
||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 844 CGTTTCAGACTTTGATTACTATATATAACGTTAAAGAGTTTCTTGAAGATGGTGTTTATA 903
Query 836 TACCGAATGATGTTAAGGCGAAGGAGATGAAGGGGTTGAAGCCGGATTGTATTACGGTTC 895
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 904 TACCTAATGATGTTAAGGCTAAGGAGATGAAGGGGTTGAAGCCTGATTGTATTACGGTTC 963
Query 896 AGAAGAAGTTTAGTAGAGATAGGGAGAGAGTTGTGACTGCTTATGAAGTTAGGGATAAGC 955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 AGAAGAAGTTTAGTAGAGATAGGGAGAGAGTTGTGACTGCTTATGAAGTTAGGGATAAGC 1023
Query 956 CTTCTGCTTTGAAGCCTGATGATTGGGATCGTGTTGTTGCGGTTTTTGTATTGGGGAAGG 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 CTTCTGCTTTGAAGCCTGATGATTGGGATCGTGTTGTTGCGGTTTTTGTATTGGGGAAGG 1083
Query 1016 ATTGGCAGTTCAAGGATTGGCCTTTTAAGGATCACGTTGAAATATTCAATAAGATCATTG 1075
|||||||||| || |||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 1084 ATTGGCAGTTTAAAGATTGGCCTTTTAAGGATCATGTTGAGATATTCAATAAGATTATTG 1143
Query 1076 GGTTCTTCTTGCGGTTTGAAGATGACAGTATCGAATCAGCCAAGACGGTGAAGCAATGGA 1135
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1144 GATTCTTCTTGCGGTTTGAAGATGATAGTATCGAATCAGCCAAGACGGTGAAGCAGTGGA 1203
Query 1136 ATGTAAAGATCATCTCGATTAGCAAGAATAAGCGGCATCAAGACCGGGCTGCTGCATTAG 1195
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1204 ATGTAAAGATCATCTCGATTAGCAAGAATAAGCGGCATCAAGACCGAGCTGCTGCATTAG 1263
Query 1196 AAGTCTGGGAAAAACTCGAGGAGTTTGTGCGATCTCGGTCGCATTCTTAG 1245
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 AAGTCTGGGAAAAACTCGAGGAGTTTGTGCGATCTCGGTCGCATTCTTAG 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5