BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905294

Length=513
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22600.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   715    0.0  


> AT3G22600.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr3:8006508-8007471 
REVERSE LENGTH=790
Length=790

 Score =  715 bits (387),  Expect = 0.0
 Identities = 477/519 (92%), Gaps = 12/519 (2%)
 Strand=Plus/Plus

Query  1    ATGAAAATGGGAATGGGTTTAGTGTTTCTTACAGTTTTTATGGCAGTGATGTCTTCTACA  60
            |||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct  75   ATGAAAATGGAAATGGGTTTAGTGTTCCTTACAGTTTTTATGGCTGTGATGTCTTCTACA  134

Query  61   GGGGTCTCTGCCCAGTCCAGCTGTACAAATGTGTTGATTAGCTTGGCGCCGTGTCTCAAC  120
              ||||||||| ||||| ||||| ||||| | |||||||||| || ||||||||||||||
Sbjct  135  ATGGTCTCTGCTCAGTCAAGCTGCACAAACGCGTTGATTAGCATGTCGCCGTGTCTCAAC  194

Query  121  TACATAACCGGAAACTCTACCTCTCCTACTCAGCAATGCTGTCGTCAGTTGGGTAGCGTA  180
            |||||||| ||||||||||||||||||| |||||||||||||  ||||||| |||| |||
Sbjct  195  TACATAACTGGAAACTCTACCTCTCCTAATCAGCAATGCTGTAATCAGTTGAGTAGAGTA  254

Query  181  GTCCAGTCTTCTCCTGACTGTTTGTGTCAAGTCCTCAACGGTGGAGGCTCTCAGCTTGGG  240
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  255  GTCCAGTCTTCTCCTGACTGTTTGTGTCAAGTCCTTAACGGTGGAGGCTCTCAGCTTGGG  314

Query  241  ATTAATGTTAACCAAACACAAGCTCTTGGTCTACCAAGGGCTTGTAATGTTCAGACTCCT  300
            || ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct  315  ATCAATGTTAACCAAACACAAGCTCTTGGTCTGCCTAGGGCTTGTAATGTTCAGACTCCT  374

Query  301  CCTGTTAGTCGCTGTAATACCGCtggtggtggtggtggtggtTCAT-CTTCTGACTCTCC  359
            ||||| ||||||||||||| | | |||||||||||||||||||| | |||||||||||||
Sbjct  375  CCTGTCAGTCGCTGTAATA-C-C-GGTGGTGGTGGTGGTGGTTC-TACTTCTGACTCTCC  430

Query  360  TGCAGAATCACCAAACTCTTCAGGACCAGGAAATGGATCGAAATCCGTACCAGCAGGGGA  419
            |||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||| ||
Sbjct  431  TGCAGAATCACCAAACTCTTCAGGACCAGGTAATGGATCGAAAACCGTACCAGTAGGAGA  490

Query  420  AGGAGACGGACC---ATCGTCTGATGGAAGCTCTATCAAGTTCTCATTTCC-CTTTCTTG  475
            ||||||||||||   |||||||||||||||||||||||||||||||||||| |||  |||
Sbjct  491  AGGAGACGGACCCCCATCGTCTGATGGAAGCTCTATCAAGTTCTCATTTCCTCTTA-TTG  549

Query  476  CCTTCCTT-TCCGCGGCTTCCTACATCGCAATCTTCTGA  513
            ||||| || ||||||| ||||||||| ||||||||||||
Sbjct  550  CCTTC-TTCTCCGCGGTTTCCTACATGGCAATCTTCTGA  587



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24514263736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5