BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905301
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22680.1 | Symbols: RDM1 | RNA-DIRECTED DNA METHYLATION 1 | ... 760 0.0
> AT3G22680.1 | Symbols: RDM1 | RNA-DIRECTED DNA METHYLATION 1
| chr3:8019708-8020508 FORWARD LENGTH=703
Length=703
Score = 760 bits (411), Expect = 0.0
Identities = 477/508 (94%), Gaps = 8/508 (2%)
Strand=Plus/Plus
Query 1 ATGCAAAGCTCAATGACATTGGAGCTACGGCCATCAGCTGATTCCGGTTCATCTGACGTC 60
|||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||||||||
Sbjct 78 ATGCAAAGCTCAATGACAATGGAACTACGACCATCAGGTGATTCCGGTTCATCTGACGTC 137
Query 61 GATGCTGAGATCAGCGATGGCTTTTCACCGCTCGATAATTCTCACAGAGACGTCGCTGAT 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 138 GATGCTGAGATCAGCGATGGCTTTTCACCGCTCGATACTTCTCACAGAGACGTCGCTGAT 197
Query 121 GAAGGTTCGTTGCTGAGAAGAGCAGAGATGTATCAAGAGTACATGAAACAAGTACCAATC 180
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 198 GAAGGTTCGTTGCTGAGAAGAGCAGAGATGTATCAAGACTACATGAAGCAAGTACCAATC 257
Query 181 CCGACGAATCGTGGCTCGTTGATTCCGTTCACGAGTTGGGTTGGTTTAAGCATCTCAATG 240
|||||||||||||||||||||||||||||||| || |||||||| |||||||| ||||||
Sbjct 258 CCGACGAATCGTGGCTCGTTGATTCCGTTCACAAGCTGGGTTGGATTAAGCATTTCAATG 317
Query 241 AAACAGCTTTATGGTCAGCCTCTACATTACCTCACGAATGTTCTCTTACAACGATGGGAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 AAACAGCTTTATGGTCAGCCTCTACATTACCTCACGAATGTTCTCTTACAACGATGGGAT 377
Query 301 CAATCACGATTCGGTACTGATTCTGAAGAACAGAGTTTGGATTCAATCTTTCATCCGT-C 359
||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| | |
Sbjct 378 CAATCACGATTCGGTACTGATTCTGAAGAACAGAGGTTGGATTCTATCATTCATCC-TAC 436
Query 360 TAAAGCTGAAGCTACCATCTGGCTTGTTGAGGAGATACATCGAATCACTTCCT-CTCATC 418
||||||||||||||| |||||||||||||| ||||| |||||| ||||| ||| ||||||
Sbjct 437 TAAAGCTGAAGCTACTATCTGGCTTGTTGAAGAGATTCATCGACTCACT-CCTTCTCATC 495
Query 419 TTCACATTGCTAGTCTCTGGGGATCTGATCCTATGTATCACTCTTTCATTGACCCAATCT 478
||||||| ||| ||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 496 TTCACATGGCTCTTCTTTGGAGATCTGATCCTATGTATCACTCTTTCATTGACCCAATCT 555
Query 479 TTCCT-A-AAATTGAAACAAGTTCTTGA 504
||||| | |||| ||| |||||||||||
Sbjct 556 TTCCTGAGAAAT-GAA-CAAGTTCTTGA 581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24062156413
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5