BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905323
Length=2376
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22860.1 | Symbols: TIF3C2, ATEIF3C-2, EIF3C-2, ATTIF3C2 | e... 3055 0.0
AT3G56150.1 | Symbols: EIF3C, ATEIF3C-1, EIF3C-1, ATTIF3C1, TIF... 1535 0.0
> AT3G22860.1 | Symbols: TIF3C2, ATEIF3C-2, EIF3C-2, ATTIF3C2 |
eukaryotic translation initiation factor 3 subunit C2 | chr3:8090654-8093248
REVERSE LENGTH=2418
Length=2418
Score = 3055 bits (1654), Expect = 0.0
Identities = 2183/2424 (90%), Gaps = 93/2424 (4%)
Strand=Plus/Plus
Query 13 CAGGGTGGAAGTGAAAGTGAAGATGAGAGTGATTTTG--AAA-AAGAGGTTGAGAGTAAC 69
||| |||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||
Sbjct 28 CAGAGTGGAAGTGAAAGTGAAGATGAGAGTGACTTTGAAAAAGAAGAGGTTGAGGGTAAC 87
Query 70 AACATTCGTTACCTTGCAGACCTACCTGACGGTGAGTTTTGTTGTTGTATGGATACAAAA 129
|||| |||||||||||||||| |||||||||||||| |||||||| |||||||||| |||
Sbjct 88 AACACTCGTTACCTTGCAGACTTACCTGACGGTGAGATTTGTTGTGGTATGGATACTAAA 147
Query 130 CGTGTGGTTAAGCCAAGAAAAGATAAATGTTTTGAAGAGATGACCAACACTATAGAGAAT 189
|||||||||||||||| |||||||||| ||||||| |||||| |||||||||||||||||
Sbjct 148 CGTGTGGTTAAGCCAAAAAAAGATAAACGTTTTGAGGAGATGGCCAACACTATAGAGAAT 207
Query 190 ATGAAGCATGCCATGAACATCAATGATTGTGTTTACTTGCAAGAAACGTTTGAGAAACTC 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 ATGAAGCATGCCATGAACATCAATGATTGTGTTTACTTGCAAGAAACGTTTGAGAAACTC 267
Query 250 AACAAACATCTTGAGAAAGTTATGAAGATTACTAAGTCTGTGAAGGCGCCGACTTTGTAT 309
||| || | | || | | | || |||||| || ||| | ||||||||||||
Sbjct 268 AAC-AA-A-C---AG--A--T-T--AG-----TAAGTCCGTAAAGACTCCGACTTTGTAT 309
Query 310 ATCAAAACCCTTGTGTTGTTGGAAGATTTCTTGAATGAAGATAA-A-G-----TAA-GA- 360
||||| ||||||||| |||||||||||||||||||||||||||| | | || ||
Sbjct 310 ATCAAGACCCTTGTGATGTTGGAAGATTTCTTGAATGAAGATAATATGAAAACAAAGGAG 369
Query 361 AAGATGAGTACTAGTAACTCCAAGGCTTTTAACTCAATGAGACAGAAACTGAAGAAGAAC 420
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 370 AAGATGAGTACTAGTAACTCCAAGGCTTTGAACGCAATGAGACAGAAACTGAAGAAGAAC 429
Query 421 AATATGCAGTACCAAGAAGATATCAATAGGTTTAGGGAGTCTCCAGATATCGAGGACGAT 480
||| |||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||
Sbjct 430 AATCTGCAGTACCAAGAAGATATCAAAAGATTTAGGGAGTCTCCAGAAATCGAAGACGAT 489
Query 481 GATGAGTATGAAGAGGAGGTGGAGGA--ATCTACTGATGATAATGTTTCTTGGGAGATGT 538
|||||||||||||||||||||| ||| || | ||| |||||||||||||||||||||||
Sbjct 490 GATGAGTATGAAGAGGAGGTGGTGGAGGAT-T-CTGCTGATAATGTTTCTTGGGAGATGT 547
Query 539 TGTTTAGTTTAGATCATGAAGTGATAACTTGGAACATGGTCAACAAGAAGTTCAAAGAAA 598
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 548 TGTTTAGTTTAGATCATGAAGAGATAACTTGGAACATGGTCAACAAGAAGTTCAAAGAAA 607
Query 599 TTATGGCTGCTCGTGGGAGTAAAAGAAGAAGTGCTAGACTTAAACTCAAAACTGGCGAGA 658
||| |||||||||| |||| |||||||||||| |||| |||||||||||| | |||||||
Sbjct 608 TTAGGGCTGCTCGTTGGAGCAAAAGAAGAAGTTCTAGCCTTAAACTCAAACCCGGCGAGA 667
Query 659 CTCACGCGGATAAGCTTATGGACTTGACAAAGATTGCCAAGACTCCTGCACAGAAGCTTG 718
|||| ||| | |||| |||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 668 CTCATGCGCAGAAGCATATGGACTTGACAAAGATCGCCAAGACTCCTGCACAGAAGGTTG 727
Query 719 TAATCTTGTTTAGCGTTATTTCAGC--AG----A---G--TT-TGGTGGTCTCAGCGAAT 766
|||||||||||| ||||||||||| || | | || |||||||||||||| ||
Sbjct 728 AAATCTTGTTTAGTGTTATTTCAGCAGAGTTTAATGTGAATTCTGGTGGTCTCAGCGGAT 787
Query 767 ACATGCCTATCGATGTCTGGAAGAAATGTGTGGTTAACATGCTTACCATACTTGACATTA 826
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 ACATGCCTATCGATGTCTGGAAGAAATGTGTGGTTAACATGCTTACCATACTTGACATTC 847
Query 827 TTGTCAAGTACTATAACATTAATGTTGTGGATGATACCGCTGAACCTGATGAGAAGGAAA 886
|||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||
Sbjct 848 TTGTCAAGTACTATAACA-T--TGTTGTGGATGATACCGTTGAACCTGATGAGAAGGAAA 904
Query 887 CTTCAAAGCCAGTGG-ATTACGATGGAACAATTCGTGTCTCGGGGAATTTGGTTGCATTC 945
|||||||||||| || | ||||||||||| ||||| |||||||| |||||||||||||||
Sbjct 905 CTTCAAAGCCAGCGGCA-TACGATGGAACCATTCGGGTCTCGGGAAATTTGGTTGCATTC 963
Query 946 TTAGAGAGGATTGAGACAGAGTTTTTCAAGGGTTTGCAGTGCATAGATCCTCACACCAAT 1005
||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 964 TTAGAGAAGATTGAGACAGAGTTTTTCAAGAGTTTGCAGTGCATTGATCCTCACACCAAT 1023
Query 1006 GAGTATGTAGAGAGATTGAAAGATGAGCCTATGTTCTTGGCTCTTGCTCAGAAAATCCAA 1065
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1024 GATTATGTTGAGAGGTTGAAAGATGAGCCTATGTTCTTGGCTCTTGCTCAGAGTATCCAA 1083
Query 1066 GACTACTTGGAGCGGAGC-GGCGATTAC-AAAGGTGCTTCAAAGGTAGCCTTAATACTAG 1123
|||||||||||||||| | ||||||| | |||| |||||||||||||||||| |||||||
Sbjct 1084 GACTACTTGGAGCGGA-CAGGCGATT-CTAAAGCTGCTTCAAAGGTAGCCTTTATACTAG 1141
Query 1124 TTGAGTCAATCTATTACAAGCCTCAAGAAGTTTTTGATGCTATGAAG-AAAATGGCTGAT 1182
| |||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||
Sbjct 1142 TCGAGTCAATCTATTACAAGCCTCAAGAAGTTTTTGATGCTATG-AGTAAATTGGCTGAT 1200
Query 1183 GAAGAAATTGAGGAGGGC-AA--A-GAAAGTGGA-------C--CTAC-TTCA------- 1221
|| ||||||||||| ||| || | ||||||||| | || | ||||
Sbjct 1201 GAGGAAATTGAGGA-GGCTAACGAGGAAAGTGGATCTTCTTCTTCTTCATTCATTGTTGT 1259
Query 1222 --C--AGATTGTTCCTCGTAAGCCTACCTTCGCAGGGAGCAGCCGCGCTATGATGGATAC 1277
| ||||||||||||||||||||||||||||| ||||||| | ||||||||||||||
Sbjct 1260 TGCGGAGATTGTTCCTCGTAAGCCTACCTTCGCAAAGAGCAGCAGAGCTATGATGGATAC 1319
Query 1278 ACTCATATCCTTTATCTACACAAATGGAGATGAAAGGGCCAAATCCAGAGCAATGCTATG 1337
||| ||||||||||||||| |||||||||||| ||| ||||| ||||||||||||||||
Sbjct 1320 ACTTGTATCCTTTATCTACAAAAATGGAGATGAGAGGACCAAAGCCAGAGCAATGCTATG 1379
Query 1338 TGATATCTATCAACATGCTTTAATGGATAACTTTGTGACTGCTAGAGACTTGTTGTTGAT 1397
||||||||||||||||||||||||||| || ||||| |||||||||||||||||| ||||
Sbjct 1380 TGATATCTATCAACATGCTTTAATGGACAATTTTGTTACTGCTAGAGACTTGTTGCTGAT 1439
Query 1398 GAGTCATCTACAAGACAACATTCAACACATGGACATTTCAACACAGATTCTCTTTAACAG 1457
||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1440 GAGTCATCTACAAGAAAACATTCAACACATGGACATCTCTACACAGATTCTCTTTAACAG 1499
Query 1458 GACAATGGCACAACTTGGTCTTTGCGCCTTTCGGGTTGGAATGATAAATGAGTCACATAG 1517
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1500 GACAATGGCACAACTTGGTCTTTGCGCTTTTCGGGTTGGAATGATAACTGAGTCACATAG 1559
Query 1518 CTGCCTCTCTGAGCTGTACTCTGGTCATAGAGTGAGGGAGTTTCTCGGCCAAGGTGTCTC 1577
||| |||||||||||||||||||| ||||||| |||||||| || || |||||||||||
Sbjct 1560 CTGTCTCTCTGAGCTGTACTCTGGGAATAGAGTTAGGGAGTTGCTTGGTCAAGGTGTCTC 1619
Query 1578 GAAAAATCGAGACCACGAGAAGACAACAGAGCAGATTCTAATGGAGAGGAGAAGACAAAT 1637
| ||| |||||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 1620 GCAAAGTCGAGACCACGAGAAGACAACAGAGCAGATGCTTATGGAGAGGAGAACACAAAT 1679
Query 1638 ACCGTACCACATGCACATAAACCTCGAGCTCTTGGAGGCTGTTTATCTTACTTGTGCCAT 1697
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 ACCGTACCATATGAACATAAACCTCGAGCTCTTGGAGGCTGTTTATCTTACTTGTGCCAT 1739
Query 1698 GCTACTTGAAGTCCCAAACATGGCAGCAAACTCGCATGATGCCAAACACAAATCGGTTAG 1757
|||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 1740 GCTACTTGAAGTCCCAAACATGGCAGCAAACTCGCATGATTCCAAACACAAACCGATTAG 1799
Query 1758 CAAGAATATTT-GTCGCCTGCTCGAGATCAGTGAGAGGCAAGCGTTCACTGCACCGCCTG 1816
|||||||||| | ||||||||||||| ||||||| |||||||||||||||||| ||||
Sbjct 1800 CAAGAATATTCAG-CGCCTGCTCGAGAAAAGTGAGAAGCAAGCGTTCACTGCACCCCCTG 1858
Query 1817 AAACTATACGTGACCATGTCATGGCAGCAACCAGAGCCTTGACCAAAGGGAAA-TTCCAA 1875
||| | |||||| ||||||||| ||||| ||||||||| ||| |||||| ||| ||||||
Sbjct 1859 AAAATGTACGTGTCCATGTCATTGCAGCCACCAGAGCCCTGATCAAAGG-AAACTTCCAA 1917
Query 1876 GAAGCGTTTTCAGTTTTGAACTCTCTTGATGTCTGGAGACTGTTCAAGAACCGCGACAGC 1935
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1918 GAAGCGTTTTCAGTTTTGAACTCTCTTGATATCTGGAGACTGTTCAAGAACCGCGACAGC 1977
Query 1936 GTCCTCAATATGGTGAAAGCTAGGATCAAG-GAAGTGGCTCTAAGGACTTATCTATTCAC 1994
| ||| |||||||||||||||| |||| | ||||||||||||||||||||| |||||||
Sbjct 1978 ATACTCGATATGGTGAAAGCTAGTATCA-GTGAAGTGGCTCTAAGGACTTATTTATTCAC 2036
Query 1995 ATACTCAAGCTCCTACTATAAGTCATTAAGTCTTGATGAGCTAGCCAAAATGTTTGACAT 2054
|||||| ||||||| || ||||| |||||||| | ||||||||||||||||||||||||
Sbjct 2037 ATACTCGAGCTCCTGTTACAAGTCCTTAAGTCTAGCTGAGCTAGCCAAAATGTTTGACAT 2096
Query 2055 CTCTGAGTCACAGGTCCATAGCATTGTGAGCAAGATGATGATCAACGAGGAGCTTACTGC 2114
|||||||||||| ||| |||| |||||||||||||||||||||||| ||||||||| |||
Sbjct 2097 CTCTGAGTCACACGTCTATAGTATTGTGAGCAAGATGATGATCAACAAGGAGCTTAATGC 2156
Query 2115 AAAATGGGACCAGCCAACTCAGTGCATCATCTTCCATGAAGTGCAACATAACAGATTACA 2174
|| |||||||||||||||||| |||||| |||||||||||||||||||||||||| |||
Sbjct 2157 AACATGGGACCAGCCAACTCAATGCATCGTCTTCCATGAAGTGCAACATAACAGAGCACA 2216
Query 2175 ATCTTTGGCTTTTCAGATAACCGAAAAGCTCTCTACTTTAGCAGAAAGCAACGAAAGTGC 2234
||| |||||||||||||| |||||||| ||| | ||| ||||||||||||||||||||||
Sbjct 2217 ATCCTTGGCTTTTCAGATTACCGAAAAACTCGCGACTCTAGCAGAAAGCAACGAAAGTGC 2276
Query 2235 AATGGAGTCTAGAAA-TGGTGGTGCTGGTCTTGATATGAGTTCAAGGAGGAGGGACAACA 2293
||||||||||| ||| |||||||| ||| |||||||||| ||||||||| ||||| ||||
Sbjct 2277 AATGGAGTCTA-AAACTGGTGGTGTTGGCCTTGATATGACTTCAAGGAGAAGGGAAAACA 2335
Query 2294 GTCAGGACTATGCAGCAGCAGCATCAGGA-AACAGAGGTCTGCAAATGGATGGCTCAAGT 2352
||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||
Sbjct 2336 GTCAGGACTATGCAGCAGCAGCATCAG-ACAACAGAGGTCTGAAAATGGATGGCTCAAGT 2394
Query 2353 CTTACCCGAGGCGTTTCTGCGTAA 2376
||||||||||||||||||||||||
Sbjct 2395 CTTACCCGAGGCGTTTCTGCGTAA 2418
> AT3G56150.1 | Symbols: EIF3C, ATEIF3C-1, EIF3C-1, ATTIF3C1, TIF3C1
| eukaryotic translation initiation factor 3C | chr3:20833584-20837157
REVERSE LENGTH=3033
Length=3033
Score = 1535 bits (831), Expect = 0.0
Identities = 1436/1717 (84%), Gaps = 85/1717 (5%)
Strand=Plus/Plus
Query 667 GATAAGCTTATGGACTTGACAAAGATTGCCAAGACTCCTGCACAGAAGCTTGTAATCTTG 726
||| |||||| | ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 917 GATCAGCTTACGCACTTGACAAAGATTGCCAAGACTCCTGCACAGAAGCTTGAAATCTTG 976
Query 727 TTTAGCGTTATTTCAGCAGAGTTTG--GTG------G-TCTCAGCGAATACATGCCTATC 777
|||||||||||||| || |||||| ||| | |||||||| |||||||||||
Sbjct 977 TTTAGCGTTATTTCGGCTCAGTTTGATGTGAATCCAGGTCTCAGCGGGCACATGCCTATC 1036
Query 778 GATGTCTGGAAGAAATGTGTGGTTAACATGCTTACCATACTTGACATTATTGTCAAGTAC 837
|||||||||||||||| ||| |||||||||| |||||||| |||||| | |||||||||
Sbjct 1037 AATGTCTGGAAGAAATGCGTGCTTAACATGCTCACCATACTGGACATTCTCGTCAAGTAC 1096
Query 838 TA-TAACATTAATGTTGTGGATGATACCGCTGAACCTGATGAGAAGGAAACTTCAAAGCC 896
| ||||||| ||||||||||| || | ||| ||||||||||| ||||||||||||||
Sbjct 1097 -AGTAACATT---GTTGTGGATGACACAGTTGAGCCTGATGAGAACGAAACTTCAAAGCC 1152
Query 897 AGTGGATTACGATGGAACAATTCGTGTCTCGGGGAA-TTTGGTTGCATTCTTAGAGAGGA 955
| ||||| ||||||| |||||| |||| |||||| ||||||||||||||| ||||||
Sbjct 1153 AACAGATTATGATGGAAAAATTCGGGTCT-GGGGAAATTTGGTTGCATTCTTGGAGAGGG 1211
Query 956 TTGAGACAGAGTTTTTCAAGGGTTTGCAGTGCATAGATCCTCACACCAATGAGTATGTAG 1015
|||| || |||||||||||| ||||||| ||||| |||||||||||| ||||||||| |
Sbjct 1212 TTGACACTGAGTTTTTCAAGAGTTTGCAATGCATTGATCCTCACACCCGTGAGTATGTTG 1271
Query 1016 AGAGATTGAAAG-ATGAGCCTATGTTCTTGGCTCTTGCTCAGAAAATCCAAGACTACTTG 1074
|||| | || | ||||||| ||||||||||| ||||||||||| ||||| ||||||||
Sbjct 1272 AGAGGCT-AAGGGATGAGCCCATGTTCTTGGCCCTTGCTCAGAACATCCAGGACTACTTT 1330
Query 1075 GAGCGGA-GCGGCGATTACAAAGGTGCTTCAAAGGTAGCCTTAATAC-TAGTTGAGTCAA 1132
||||||| | || |||| |||| |||| ||||||||||||||| || | |||||| |||
Sbjct 1331 GAGCGGATG-GGTGATTTTAAAGCTGCTGCAAAGGTAGCCTTAAGACGT-GTTGAGGCAA 1388
Query 1133 TCTATTACAAGCCTCAAGAAGTTTTTGATGCTATGAAGAAAATGGCTGA-T-G----AAG 1186
| || |||||||| || ||||||| |||||| |||| |||| ||||||| | | |||
Sbjct 1389 TATACTACAAGCCCCAGGAAGTTTATGATGCAATGAGGAAATTGGCTGAGTTGGTGGAAG 1448
Query 1187 AA-AT--------TGAGGAGGGCAAAGA--AA-GTGGACCT---ACTTCACAGATTGTT- 1230
|| | |||||||| |||||| || |||||||| |||||| ||||||
Sbjct 1449 AAGAAGAAGAAACTGAGGAGGCCAAAGAGGAAAGTGGACCTCCTACTTCATTTATTGTTG 1508
Query 1231 --CC-----T----C---GTAAGCCTACCTTCGCAGGGAGCAGCCGCGCTATGATGGATA 1276
|| | | |||||||||||||| ||| ||||||||| |||||||||||||
Sbjct 1509 TTCCGGAGGTTGTTCCCCGTAAGCCTACCTTCCCAGAGAGCAGCCGAGCTATGATGGATA 1568
Query 1277 CACTCATATCCTTTATCTACACAAATGGAGATGAAAGGGCCAAATC-CAGAGCAATGCTA 1335
|| | ||| ||||||||| |||||||||||| || ||||| | | | || ||||||
Sbjct 1569 TTCTTGTGTCCCTTATCTACAGAAATGGAGATGAGCGGACCAAAGCGC-GTGCGATGCTA 1627
Query 1336 TGTGATATCTATCAACATGCTTTAATGGATAACTTTGTGACTGCTAGAGACTTGTTGTTG 1395
||||||||| |||| |||||||||||||| ||||||||||||||||||||| ||||| ||
Sbjct 1628 TGTGATATCAATCACCATGCTTTAATGGACAACTTTGTGACTGCTAGAGACCTGTTGCTG 1687
Query 1396 ATGAGTCATCTACAAGACAACATTCAACACATGGACATTTCAACACAGATTCTCTTTAAC 1455
||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 1688 ATGAGTCATCTGCAAGACAACATCCAGCACATGGACATCTCAACACAGATTCTCTTTAAC 1747
Query 1456 AGGACAATGGCACAACTTGGTCTTTGCGCCTTTCGGGTTGGAATGATAAATGAGTCACAT 1515
||||| ||||| || ||||||||||||||||| |||| ||||||||| | |||||| |||
Sbjct 1748 AGGACCATGGCGCAGCTTGGTCTTTGCGCCTTCCGGGCTGGAATGATCACTGAGTCCCAT 1807
Query 1516 AGCTGCCTCTCTGAGCTGTACTCTGGTCATAGAGTGAGGGAGTTTCTCGGCCAAGGTGTC 1575
|||||||| || ||||||||||||||||| |||||||| ||||| || | ||||||||||
Sbjct 1808 AGCTGCCTTTCCGAGCTGTACTCTGGTCAAAGAGTGAGAGAGTTGCTTGCCCAAGGTGTC 1867
Query 1576 TCGAAAAATCGAGACCACGAGAAGACAACAGAGCAG-ATTCTAATGGAGAGGAGAAGACA 1634
||| ||| ||| |||| ||||| || | |||||| | | |||| |||||||||||
Sbjct 1868 TCGCAAAGCCGATACCATGAGAAAACCCCGGAGCAGGAAAGGA-TGGAAAGGAGAAGACA 1926
Query 1635 AATACCGTACCACATGCACATAAACCTCGAGCT-CTTGGAGGCTGTTTATCTTA-CTTGT 1692
||| ||||||||||||||| ||||||| ||||| || |||||| ||| |||| | || ||
Sbjct 1927 AATGCCGTACCACATGCACTTAAACCTTGAGCTTCT-GGAGGCAGTTCATCTCATCT-GT 1984
Query 1693 GCCATGCTACTTGAAGTCCCAAACATGGCAGCAAACTCGCATGATGCCAAACACAAA-TC 1751
|||||||| |||||||||||||||||||| ||||||||||| |||||||||| || | |
Sbjct 1985 GCCATGCTTCTTGAAGTCCCAAACATGGCTGCAAACTCGCACGATGCCAAACGCAGAGT- 2043
Query 1752 GGTTAGCAAGAATATTT-GTCGCCTGCTCGAGATCAGTGAGAGGCAAGCGTTCACTGCAC 1810
| ||||||||||| || | |||||||||||||||||||| |||||||| ||||||||||
Sbjct 2044 GATTAGCAAGAAT-TTCCGCCGCCTGCTCGAGATCAGTGAAAGGCAAGCATTCACTGCAC 2102
Query 1811 CGCCTGA-AACTATACGTGACCATGTCATGGCAGCAACCAGAGCCTTGACCAAAGGGAAA 1869
||||||| || | |||||||||||||||||||||| ||||||||| |||||||||| | |
Sbjct 2103 CGCCTGAGAA-TGTACGTGACCATGTCATGGCAGCCACCAGAGCCCTGACCAAAGG-AGA 2160
Query 1870 TT-CCAAGAAG-CGTTTTCAGTTTTGAACTCTCTTGATGTCTGGAGACTGTTCAAGAACC 1927
|| ||| |||| ||||| |||||||||||||||||| |||||||| ||| |||||||||
Sbjct 2161 TTTCCA-GAAGGCGTTTGAAGTTTTGAACTCTCTTGAGGTCTGGAGGCTGCTCAAGAACC 2219
Query 1928 GCGACAGCGTCCTCAATATGGTGAAAGCTAGGATCAAGGAAGTGGCTCTAAGGACTTATC 1987
| |||||| |||| | |||||||| | ||||||||| |||| ||||||||||||||| |
Sbjct 2220 GTGACAGCATCCTTGACATGGTGAAGGATAGGATCAAAGAAGAGGCTCTAAGGACTTACC 2279
Query 1988 TATTCACATACTCAAGCTCCTACTATAAGTCATTAAGTCTTGATGAGCTAGCCAAAATGT 2047
||||||||||||||||||| | ||| |||| || ||||||||| |||| ||||||||||
Sbjct 2280 TATTCACATACTCAAGCTC-T--TATGAGTCCTTGAGTCTTGATCAGCTGGCCAAAATGT 2336
Query 2048 TTGACATCTCTGAGTCACAGGTCCATAGCATTGTGAGCAAGATGATGATCAACGAGGAGC 2107
||||| |||||||| | |||||||| ||||||||||| ||||||||||| || ||||| |
Sbjct 2337 TTGACGTCTCTGAGCCGCAGGTCCACAGCATTGTGAGTAAGATGATGATTAATGAGGAAC 2396
Query 2108 TT-ACTGCAAAATGGGACCAGCCAACTC-AGTGCATCATCTTCCATGAAGTGCAACATAA 2165
| | ||||| ||||| |||||||| | | |||||| ||||||||||||||||||| |
Sbjct 2397 TGCA-TGCAAGCTGGGATCAGCCAACACGA-TGCATCGTCTTCCATGAAGTGCAACACAG 2454
Query 2166 CAGATTACAATCTTTGGCTTTTCAGATAACCGA-AAAGCTCTCTACTTTAGCAGAAAGCA 2224
|||||||||||| |||||||| ||| |||| || ||| ||||| | ||| ||||||||||
Sbjct 2455 CAGATTACAATCATTGGCTTTCCAGTTAACGGAGAAA-CTCTCGATTTTGGCAGAAAGCA 2513
Query 2225 ACGAAAGTGCAATGGAGTCTAGAAATGGTGGTGCTGGTCTTGATATGAGTTCAAGGAGGA 2284
| || || |||||||| ||||||| ||||| | |||||| ||| ||||||||||||| |
Sbjct 2514 ATGAGAGGGCAATGGAATCTAGAACCGGTGGAGGTGGTCTGGATCTGAGTTCAAGGAGAA 2573
Query 2285 GGGACAACAGTCAGGACTATGCAGCAGCAGCATCAGG 2321
||||||||| |||||||||||||| ||||||||||||
Sbjct 2574 GGGACAACAATCAGGACTATGCAGGAGCAGCATCAGG 2610
Score = 250 bits (135), Expect = 5e-65
Identities = 294/367 (80%), Gaps = 25/367 (7%)
Strand=Plus/Plus
Query 121 GATACAAAACGTGTGGTTAAGCCAAG-AAAAGATAAATGTTTTGAAGAGATGACCAACAC 179
||||| ||||||||||||||||| | || |||||| ||||||| ||||||||| ||||
Sbjct 263 GATACGAAACGTGTGGTTAAGCC-TGCTAAGGATAAACGTTTTGAGGAGATGACCTACAC 321
Query 180 TATAGAGAATATGAAGCATGCCATGAACATCAATGATTGTGTTTA--CTTGCAAG-AAAC 236
| | || | |||||| |||| ||||| ||||||||||| | | | ||| |||| ||||
Sbjct 322 TGTTGATCAGATGAAGAATGCTATGAAGATCAATGATTG-GGTCAGCCTT-CAAGAAAAC 379
Query 237 GTTTGAGAAACTCAACAAACATCTTGAGAAAGTTATGAAGATTACTAAGTCTGTGAAGGC 296
||||| || | |||||||| |||||||| ||||||| ||||||| || |||||||| |
Sbjct 380 -TTTGATAAGGTTAACAAACAGCTTGAGAAGGTTATGAGGATTACTGAGGCTGTGAAGCC 438
Query 297 GCCGACTTTGTATATCAAAACCCTTGTGT-TGTTGGAAGATTTCTTGAATGAA------G 349
|| || ||||||||||| || ||||| | ||||||| ||||||||||||||| |
Sbjct 439 TCCTACCTTGTATATCAAGACGCTTGT-TATGTTGGAGGATTTCTTGAATGAAGCTCTTG 497
Query 350 ---AT-A--AAG-TAAG-A-AAGATGAGTACTAGTAACTCCAAGGCTTTTAACTCAATGA 400
|| | ||| ||| | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 498 CCAATAAGGAAGCCAAGAAGAAGATGAGTACTAGTAACTCCAAGGCTTTGAACTCAATGA 557
Query 401 GACAGAAACTGAAGAAGAACAATATGCAGTACCAAGAAGATATCAATAGGTTTAGGGAGT 460
||||||| ||||||||||||||| | |||| |||| |||||||| | || | | |||
Sbjct 558 AACAGAAATTGAAGAAGAACAATAAGTTGTACGAAGACGATATCAACAAGTATCGTGAGG 617
Query 461 CTCCAGA 467
|||||||
Sbjct 618 CTCCAGA 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117971280750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5