BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905333

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22942.1 | Symbols: AGG2 | G-protein gamma subunit 2 | chr3:...   510    2e-144


> AT3G22942.1 | Symbols: AGG2 | G-protein gamma subunit 2 | chr3:8134190-8136204 
FORWARD LENGTH=1125
Length=1125

 Score =  510 bits (276),  Expect = 2e-144
 Identities = 295/304 (97%), Gaps = 2/304 (1%)
 Strand=Plus/Plus

Query  1    ATGGAAGCGGGTAGCTCCAATTCGTCGGGTCAGCTATCCGGGCGGGTCGTTGATACAAGA  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  286  ATGGAAGCGGGTAGCTCCAATTCGTCGGGTCAGCTATCCGGGCGGGTCGTTGATACAAGA  345

Query  61   GGCAAACATAGGATTCAAGCTGAACTCAAAAGGCTTGAACAAGAAGCTCGATTCTTAGAG  120
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  346  GGCAAACACAGGATTCAAGCTGAACTCAAAAGGCTTGAACAAGAAGCTCGATTCTTAGAG  405

Query  121  GACGAGCTGGAGCAGCTTGAAAAGATGGACAATGCATCAGCGTCATGCAAAGAGTTCTTA  180
            || ||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct  406  GAAGAGCTGGAGCAGCTTGAGAAGATGGACAATGCATCAGCATCCTGCAAAGAGTTCTTA  465

Query  181  GACAGTGTTGAGAGCAAACCCGATCCTCTTCTTCCCGAAACAACAGGTCCGGTGAATGAC  240
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  466  GACAGTGTTGACAGCAAACCCGATCCTCTTCTTCCCGAAACAACAGGTCCGGTGAATG-C  524

Query  241  -ACATGGGATCAATGGTTCGAAGGCCCTAAAGAAGCTAAACGATGTGGCTGCTCCATTCT  299
             ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  525  GACATGGGATCAATGGTTCGAAGGCCCTAAAGAAGCAAAACGATGTGGCTGCTCCATTCT  584

Query  300  TTGA  303
            ||||
Sbjct  585  TTGA  588



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14024701971


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5