BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905337

Length=612
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G22961.1 | Symbols:  | Paired amphipathic helix (PAH2) super...   641    0.0  


> AT3G22961.1 | Symbols:  | Paired amphipathic helix (PAH2) superfamily 
protein | chr3:8142138-8142809 FORWARD LENGTH=672
Length=672

 Score =  641 bits (347),  Expect = 0.0
 Identities = 471/530 (89%), Gaps = 11/530 (2%)
 Strand=Plus/Plus

Query  1    ATGAAGAATCAGGAGATAGATTTTTATCAAACTCCGTCGGATTGTTCGGACGAAGAGATT  60
            ||||||||||| |||| |||||||||| |||||||||||||||||||||| |||||||||
Sbjct  25   ATGAAGAATCAAGAGAGAGATTTTTATGAAACTCCGTCGGATTGTTCGGAAGAAGAGATT  84

Query  61   CAACGAAGTTGCGAGTTTGTGAAAAAAGTGAAAGAGTTGGATGATAAGACAATCATCGTT  120
            ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  85   CAACGGAGTTGCGAGTTCGTGAAAAAAGTTAAAGAGTTGGATGATAAGACAATCATCGTT  144

Query  121  AAATTTGTCAATGCAATGAAGTCTTATCATTATCAATCTAAGTCTTTAAGCTACATCGAT  180
            |||||| | ||||||||||||     || ||||| ||||||||||||||| |||||||||
Sbjct  145  AAATTTTTAAATGCAATGAAG-----TC-TTATCGATCTAAGTCTTTAAGTTACATCGAT  198

Query  181  CTCAAAACCAAAGTCGCTTCCATTCTTCGTAATCACGACGTTTTGCTCCAAGAATTCTAT  240
            |||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||| ||
Sbjct  199  CTCAAAACCAAAGTCGCTTCTATTCTTCGTAACCACGACGCTCTGCTCCAAGAATTCCAT  258

Query  241  CAG---CTTCTATTGGATTTACCTATCACGGAGAAGAATTGTAACTCGGCAAAATCAGAC  297
            |||   |||||||| |||| ||||||||| |||||| |||||||||||||||||||||||
Sbjct  259  CAGCTTCTTCTATTAGATTCACCTATCACAGAGAAGGATTGTAACTCGGCAAAATCAGAC  318

Query  298  GTAGAACGCACGGTTGAGTTCATGAACAAAGTGGAAGCTTTGGGGAAGGATTTACACGGT  357
            |||||||||||||||||||| ||||| |||||||||| |||||| |||| ||||||||||
Sbjct  319  GTAGAACGCACGGTTGAGTTGATGAAGAAAGTGGAAGGTTTGGGAAAGGGTTTACACGGT  378

Query  358  GTGTTTCTAAATCTGTTTGCCTTTGGCGGTGATATAGTG-ACTTTGATTGAACAATTCGA  416
            | ||| ||||||| | | |  |||||||||||||| ||| | |||| |||||||| ||||
Sbjct  379  GCGTTCCTAAATCAGCTGGTGTTTGGCGGTGATATTGTGGA-TTTGGTTGAACAACTCGA  437

Query  417  CGTGATTTTCCGCGATCACGCATCTCTTAAAGAGGAGTTTAAAGCGTTTCTAATCGATTC  476
            ||||||| || |||||||||||||||||||||||||||| | |  ||||||| | |||||
Sbjct  438  CGTGATTCTCTGCGATCACGCATCTCTTAAAGAGGAGTTCATATTGTTTCTAGTTGATTC  497

Query  477  CCGTATACTCAAAAACCCGAAACGTGGTTTTGAGGCGGAGGTTGAAGAGT  526
            |||| |||||||||| |||||||||||||||||||||| ||  |||||||
Sbjct  498  CCGTTTACTCAAAAAACCGAAACGTGGTTTTGAGGCGGGGGCAGAAGAGT  547



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29487444289


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5