BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg905337 Length=612 Score E Sequences producing significant alignments: (Bits) Value AT3G22961.1 | Symbols: | Paired amphipathic helix (PAH2) super... 641 0.0 > AT3G22961.1 | Symbols: | Paired amphipathic helix (PAH2) superfamily protein | chr3:8142138-8142809 FORWARD LENGTH=672 Length=672 Score = 641 bits (347), Expect = 0.0 Identities = 471/530 (89%), Gaps = 11/530 (2%) Strand=Plus/Plus Query 1 ATGAAGAATCAGGAGATAGATTTTTATCAAACTCCGTCGGATTGTTCGGACGAAGAGATT 60 ||||||||||| |||| |||||||||| |||||||||||||||||||||| ||||||||| Sbjct 25 ATGAAGAATCAAGAGAGAGATTTTTATGAAACTCCGTCGGATTGTTCGGAAGAAGAGATT 84 Query 61 CAACGAAGTTGCGAGTTTGTGAAAAAAGTGAAAGAGTTGGATGATAAGACAATCATCGTT 120 ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 85 CAACGGAGTTGCGAGTTCGTGAAAAAAGTTAAAGAGTTGGATGATAAGACAATCATCGTT 144 Query 121 AAATTTGTCAATGCAATGAAGTCTTATCATTATCAATCTAAGTCTTTAAGCTACATCGAT 180 |||||| | |||||||||||| || ||||| ||||||||||||||| ||||||||| Sbjct 145 AAATTTTTAAATGCAATGAAG-----TC-TTATCGATCTAAGTCTTTAAGTTACATCGAT 198 Query 181 CTCAAAACCAAAGTCGCTTCCATTCTTCGTAATCACGACGTTTTGCTCCAAGAATTCTAT 240 |||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||| || Sbjct 199 CTCAAAACCAAAGTCGCTTCTATTCTTCGTAACCACGACGCTCTGCTCCAAGAATTCCAT 258 Query 241 CAG---CTTCTATTGGATTTACCTATCACGGAGAAGAATTGTAACTCGGCAAAATCAGAC 297 ||| |||||||| |||| ||||||||| |||||| ||||||||||||||||||||||| Sbjct 259 CAGCTTCTTCTATTAGATTCACCTATCACAGAGAAGGATTGTAACTCGGCAAAATCAGAC 318 Query 298 GTAGAACGCACGGTTGAGTTCATGAACAAAGTGGAAGCTTTGGGGAAGGATTTACACGGT 357 |||||||||||||||||||| ||||| |||||||||| |||||| |||| |||||||||| Sbjct 319 GTAGAACGCACGGTTGAGTTGATGAAGAAAGTGGAAGGTTTGGGAAAGGGTTTACACGGT 378 Query 358 GTGTTTCTAAATCTGTTTGCCTTTGGCGGTGATATAGTG-ACTTTGATTGAACAATTCGA 416 | ||| ||||||| | | | |||||||||||||| ||| | |||| |||||||| |||| Sbjct 379 GCGTTCCTAAATCAGCTGGTGTTTGGCGGTGATATTGTGGA-TTTGGTTGAACAACTCGA 437 Query 417 CGTGATTTTCCGCGATCACGCATCTCTTAAAGAGGAGTTTAAAGCGTTTCTAATCGATTC 476 ||||||| || |||||||||||||||||||||||||||| | | ||||||| | ||||| Sbjct 438 CGTGATTCTCTGCGATCACGCATCTCTTAAAGAGGAGTTCATATTGTTTCTAGTTGATTC 497 Query 477 CCGTATACTCAAAAACCCGAAACGTGGTTTTGAGGCGGAGGTTGAAGAGT 526 |||| |||||||||| |||||||||||||||||||||| || ||||||| Sbjct 498 CCGTTTACTCAAAAAACCGAAACGTGGTTTTGAGGCGGGGGCAGAAGAGT 547 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29487444289 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5