BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905352

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G02580.1 | Symbols:  | NADH-ubiquinone oxidoreductase 24 kDa...   174    4e-43


> AT4G02580.1 | Symbols:  | NADH-ubiquinone oxidoreductase 24 kDa 
subunit, putative | chr4:1134467-1137156 FORWARD LENGTH=1137
Length=1137

 Score =  174 bits (94),  Expect = 4e-43
 Identities = 108/115 (94%), Gaps = 0/115 (0%)
 Strand=Plus/Plus

Query  1    GTTAAGGAGATACTCTCTTACTATCCATCCAATTACAAGCAGTTTGCAGTTATTCCTCTT  60
            ||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||| 
Sbjct  288  GTTAAGGAGATTCTCTCTTACTATCCATCCAATTACAAGCAGTCCGCAGTTATTCCTCTC  347

Query  61   CTAGATCTTGCACAACAGCAGCATGGAGGCTGGCTCCCTGTTTCTGCTATGAATG  115
            ||||||||||||||||||||| |||||||||||||||||||||| || |||||||
Sbjct  348  CTAGATCTTGCACAACAGCAGAATGGAGGCTGGCTCCCTGTTTCAGCAATGAATG  402



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14477111712


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5