BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905388
Length=816
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23350.1 | Symbols: | ENTH/VHS family protein | chr3:835410... 1031 0.0
> AT3G23350.1 | Symbols: | ENTH/VHS family protein | chr3:8354104-8355201
FORWARD LENGTH=846
Length=846
Score = 1031 bits (558), Expect = 0.0
Identities = 758/849 (89%), Gaps = 36/849 (4%)
Strand=Plus/Plus
Query 1 ATGGGGACACTTTGGTTTGGAGAAATCAGGAAACAAGCCTCTTCGTTTATTCAAGACAAG 60
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGACACTTTGGTTTGGAGATTTCAAGAAACAAGCCTCTTCGTTTATTCAAGACAAG 60
Query 61 TACAATGTTGCTAGACTTGTCCTCACCGATGTTACCGAAGCTGAGTTGTTAGTTGAAGAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 TACAATGTTGCTAGACTTGTCCTCACCGATGTTACCGAAGCTGAGTTGTTAGTAGAAGAA 120
Query 121 GTGACAAATGATGATCCTTCTTCACCAGACGCTAAAACGGTGACGAAAATAGCCGAGGCA 180
|| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 GTAACAAATGGTGATCCTTCTTCACCAGACGCTAAAACGATGACGAAAATAGCCGAGGCA 180
Query 181 TCGTTTGATACTGTGGACTATTGGAGAATTGT-G--G------AT-G-AAG---GGG-AA 225
||||||||||| ||||| |||||||||||||| | | || | ||| ||| ||
Sbjct 181 TCGTTTGATACCGTGGAGTATTGGAGAATTGTGGATGTTCTTCATAGAAAGATTGGGAAA 240
Query 226 -AT----GA-AG---AAG---TGGAGAGAAGCGTACAAAGCAATGGTGTTGTTGGAGTTT 273
|| || || ||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 241 GATGAAAGAGAGATAAAGAATTGGAGAGAAGCGTACAAGGCAATGGTGTTGTTGGAGTTC 300
Query 274 TTACTAACACATGGTCCTCTTCATTTGCCTCATGATTTTCTTTATGACTTGGATCATTTT 333
||||||| ||||| ||| ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 301 TTACTAATGCATGGACCTATTCATTTACCTCATGATTTTCTTTATGATTTGGATCATTTT 360
Query 334 CGATTCCTCTCTACTTTCCAATACGTTGACGATAATGGGTTTGATTGGGGAGCTCAAGTT 393
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 CGATTCCTCTCCACTTTCCAATACGTTGACAATAATGGGTTTGATTGGGGAGCTCAAGTT 420
Query 394 CAGAAAAAGGCAGAGCAAATACAAACTCTTCTTTTAGGAAAAGAAGAATTAAGAGAAGCT 453
|| ||||||||||| ||||| ||||| ||||| ||||| |||||||||||||||||||||
Sbjct 421 CAAAAAAAGGCAGATCAAATTCAAACACTTCTATTAGGGAAAGAAGAATTAAGAGAAGCT 480
Query 454 CGTCTTAAAGCTCTCAAAATCACTTCCCAAATCAATGGCTTTGGTAACTCCACCACATTC 513
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGTCTTAAAGCTCTCAAAATCACTTCCCAAATCAATGGCTTTGGTAACTCCACCACATTT 540
Query 514 TCTCCTTCTCCT--TCCCC-ATCTAACTCCTTCTCTCCCTTAAAAACCTCCAATTCAACA 570
|||||||||||| | | | |||||||||||||||| |||| ||||||||||||||||||
Sbjct 541 TCTCCTTCTCCTAATTCTCTATCTAACTCCTTCTCTTCCTTGAAAACCTCCAATTCAACA 600
Query 571 CCAACCAAAAGAAACAATCCTATATCCGAATCCGATTCATTAATCGACTG-CGAAAACAA 629
||||||||||||| ||| ||||||||| || |||| ||||||||| | |||||||||
Sbjct 601 CCAACCAAAAGAATTGATCTTATATCCGAGTCATATTCGTTAATCGAC-GACGAAAACAA 659
Query 630 GCTCACGGAGAAGGATCGAA-CCGGTGAAGAGACGCTAATCAGCGGAATCTGCTCCAAAC 688
|||| |||||||||||| || || | ||||||||||| |||||||||||||| | ||||
Sbjct 660 GCTCTCGGAGAAGGATC-AAGCCAGCAAAGAGACGCTAGTCAGCGGAATCTGCACAAAAC 718
Query 689 TCGCCGGATTTAGTCCTTTGAAGAAATTT-AACGGTGGTCGTACCACGGCGGCAAAATTT 747
||||||||||||| |||||||| || ||| || || |||||||| | |||||||||||||
Sbjct 719 TCGCCGGATTTAGCCCTTTGAACAAGTTTCAA-GGCGGTCGTACTAAGGCGGCAAAATTT 777
Query 748 CAAACTTTGTCGAACGTTGAGAGAGTTTCAAGTAAATGTTACGATCGTCGCAATTCTATT 807
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 778 CAAACTTTGTCTAACGTTGAGAGAGTTTCAAGTAAATGTTACGATCGTTGCAATTCTATT 837
Query 808 GGCTACTAA 816
|| ||||||
Sbjct 838 GGTTACTAA 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39735210277
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5