BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg905423 Length=960 Score E Sequences producing significant alignments: (Bits) Value AT5G03480.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 486 1e-136 AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 435 5e-121 AT5G53700.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 65.8 8e-10 > AT5G03480.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:869208-870855 REVERSE LENGTH=966 Length=966 Score = 486 bits (263), Expect = 1e-136 Identities = 500/609 (82%), Gaps = 38/609 (6%) Strand=Plus/Plus Query 132 CACGACGGTTTCCGTTGAGGGATATGACACTTGGCTTCGAAAGTATCCTCTCAAACTCGT 191 ||||||| | |||||||||||||||||||||| ||||| |||||||| |||| | ||| | Sbjct 336 CACGACGATCTCCGTTGAGGGATATGACACTTCGCTTCAAAAGTATCTTCTCGAGCTCAT 395 Query 192 GTTGGAAAAACATTTCGCTTCATGCGGAGAGATCACAAATATTTATGTACCCACAGACTT 251 |||||||||||||||| ||||||||||||||| | | || ||||||| |||||||||| Sbjct 396 CTTGGAAAAACATTTCGATTCATGCGGAGAGATTAGACATGTTTATGTTCCCACAGACTA 455 Query 252 TGAAAGGGGTATCCTCAAGAGTGTTGCCTTCATGAGGATCGAGGGAGAAGGTGCCGAAGA 311 |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 456 TGAAAGGGGTGTCCTCAAGAGTGTTGCCTTCTTGAGGATCGAGGGAGAAGGTGCCGAAGA 515 Query 312 AAAGGCATTGCAACTTAGTGGAACTGACATCGGAGGATGGACTGCTATCGTTAAGCCTGC 371 ||||||||||||||||||||||||||| | | ||||||||||| |||||||||||| Sbjct 516 CAAGGCATTGCAACTTAGTGGAACTGACGTTGTAGGATGGACTGTTATCGTTAAGCC--- 572 Query 372 ACCCTGGCAGAAAGTATTC-ATGGATGATCCTAGGTATGCTGGTCCTAGGTGTGCTGCTG 430 | || | | || ||||| ||| || || || | |||| ||| | || || Sbjct 573 ATCC-G--A-AA--TATTCTATG-ATAATTCTTCGCGTGCT---CCT-GCAA--CTACTC 619 Query 431 CTCCCGCCGATACCAAAACACACATGATCCGCATTACCGGATATGACACTTCGCTTCCTA 490 || || || |||||| ||||| | |||| |||| ||||||||| ||||||||||| Sbjct 620 CTGAGGC--AT-CCAAAATACACAGGTTCCGTGTTACGGGATATGACGCTTCGCTTCCTG 676 Query 491 AGATTGATATGCAGATCGCGCTGTATAAACATTTCTCCTCATGTGGATCA-ATCTGGAAA 549 |||||||||| ||||| || |||| |||||||||||| ||||||||| | |||||| || Sbjct 677 AGATTGATATCCAGATGGCTCTGTGTAAACATTTCTCTTCATGTGGAG-AGATCTGGCAA 735 Query 550 GTTATAGTTCTCAAAAGCGGTGCAGCTTTTATTTATCTT-GAAGGAGAAAGATGTGTAGA 608 |||| ||||||| || | ||||||| ||| |||| || ||||||||||||||||| Sbjct 736 GTTACAGTTCTCTCTAG---TACAGCTTTCGTTTCTCTTAGA-GGAGAAAGATGTGTAGA 791 Query 609 CAAGGCGCTGGAACTAAGTGGACGGAACATGGGAGGATCGACTCTTGTAGTT---GAACC 665 |||||||||||||||||||||| | |||||||||| | ||||||||||||| ||||| Sbjct 792 CAAGGCGCTGGAACTAAGTGGATGTAACATGGGAGAAAGGACTCTTGTAGTTAATGAACC 851 Query 666 TGTTGTGCCGCGACCCGATA-TCCTaaaaa-aaaGAAGGC--CGCTCGCCTGCACTACTA 721 ||||||||||| |||||| | || |||||| ||| |||| ||| | | |||||||| | Sbjct 852 TGTTGTGCCGCAACCCGA-ACTCTTAAAAAGAAA-AAGGGTACGC-CAC-TGCACTACCA 907 Query 722 CTGGCTATA 730 ||||||||| Sbjct 908 CTGGCTATA 916 Score = 255 bits (138), Expect = 4e-67 Identities = 211/245 (86%), Gaps = 10/245 (4%) Strand=Plus/Plus Query 130 AGCACGACGGTTTCCGTTGAGGGATATGACACTTGGCTTCGAA--AGTATCCTCTCAAAC 187 |||||| | ||| |||||| ||||||||||||| |||| || |||||||||||| | Sbjct 67 AGCACGGCTATTTGCGTTGAAGGATATGACACTTCGCTT--AAGGAGTATCCTCTCAGGC 124 Query 188 TCGTGTTGGA-AAAACATTTCGCTTCATGCGGAGAGATCACA-AATATTTATGTACCCAC 245 | | ||| || ||||||||||||||||||||||||||||||| || |||||||| || | Sbjct 125 TGGCGTT-GACAAAACATTTCGCTTCATGCGGAGAGATCACACAA-ATTTATGTTCCAAG 182 Query 246 AGACTTTGAAAGGGGTATCCTCAAGAGTGT-TGCCTTCATGAGGATCGAGGGAGAAGGTG 304 ||||||| ||| | |||||||||||||| | |||||||| ||||| |||||||||||| Sbjct 183 AGACTTTAAAAAGAAAATCCTCAAGAGTGTCT-CCTTCATGTGGATCAAGGGAGAAGGTG 241 Query 305 CCGAAGAAAAGGCATTGCAACTTAGTGGAACTGACATCGGAGGATGGACTGCTATCGTTA 364 ||||||| ||||||||||||||||||||||||||| | ||||||||||||| |||||||| Sbjct 242 CCGAAGACAAGGCATTGCAACTTAGTGGAACTGACGTGGGAGGATGGACTGTTATCGTTA 301 Query 365 AGCCT 369 ||||| Sbjct 302 AGCCT 306 > AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:873331-875251 REVERSE LENGTH=1290 Length=1290 Score = 435 bits (235), Expect = 5e-121 Identities = 600/765 (78%), Gaps = 69/765 (9%) Strand=Plus/Plus Query 92 acgatagtggtgCAGACTCTC-AAACTCCCCGTATCTCC-AGCACGACGGTTTCCGTTGA 149 |||| | ||||||| |||||| ||| ||||||||| || | |||| | ||||||| || Sbjct 270 ACGAGATTGGTGCAAACTCTCGAAA-GCCCCGTATC-CCTTGGACGAAGATTTCCGTGGA 327 Query 150 GGGATATGACACTTGGCTTCGAAAGTATCCTCTCAAACTCGTGTTGGAAAAACATTTCGC 209 ||||||||||||| |||| || ||||| | |||| ||||||||||||||||||||||| Sbjct 328 GGGATATGACACTAGGCTCCGTGAGTATACAGTCAAGCTCGTGTTGGAAAAACATTTCGC 387 Query 210 TTCATGCGGAGAGATCACAAATATTTATGTACCCACAGACTTTGAAAGGGGTATCCTCAA 269 |||||||||| |||||||| |||||||||| |||| |||||||||||||||||||||||| Sbjct 388 TTCATGCGGAAAGATCACACATATTTATGTTCCCAGAGACTTTGAAAGGGGTATCCTCAA 447 Query 270 GAGTGTTGCCTTCATGAGGATCGAGGGAGAAGGTGCCGAAGAAAAGGCATTGCAACTTAG 329 |||||| ||||||||| | ||| | |||||||||| ||||||||||||||||| ||||| Sbjct 448 GAGTGTCGCCTTCATGTGTATCAAAGGAGAAGGTGGCGAAGAAAAGGCATTGCTGCTTAG 507 Query 330 TGGAACTGACATCGG-AGGATGGACTGCTATCGTTAAGCCTGCACCCTGGCAGAAAGTAT 388 |||||||||| ||| |||||||||||| |||||||||||||||| ||||||||||| | Sbjct 508 TGGAACTGACG-CGGGAGGATGGACTGCAATCGTTAAGCCTGCACTCTGGCAGAAAGAAA 566 Query 389 TCATGGATGATCCTAGGTATGCTGGTCCTAGGTGTGCTGCTGCTCCCGCCGATACCAAAA 448 |||||||| ||| || || |||| || | ||| || | | ||| Sbjct 567 TCATGGAT---CCTTGG----CT--TCCT-GG----CA--TGC-CCAAACT-TG--AAA- 605 Query 449 CACACATGATCCGCATTACCGGATATGACACTTC-GCTTCCTAAGATTGATATGCAGATC 507 |||||| | ||||| |||| ||||||||||||| | |||||||||||||||| ||||| Sbjct 606 CACACAGGGTCCGCGTTACGGGATATGACACTTGTG-TTCCTAAGATTGATATCCAGATG 664 Query 508 GCGCT-GTATAAACATTTCTCCTCATGTGGATCAA-TCTGGAAAGTTATAGTTCT-CAAA 564 || || || | |||||||||| ||||||||| | || | ||||| | ||||| | | Sbjct 665 GC-CTTGTGTGAACATTTCTCTTCATGTGGAG-AGGTCACGCAAGTTGTGGTTCTGCCTA 722 Query 565 AGCGGTGCAGCTTTTATTTATCTTGAAGGAGAAAGATGTGTAG-ACAAGGCGCTGGAACT 623 ||||| ||| || ||||||||| ||||||||||||||| || |||||||||| |||| Sbjct 723 -GCGGTTCAGGTTCCATTTATCTTCAAGGAGAAAGATGTG-AGGACAAGGCGCTTCAACT 780 Query 624 AAGTGGACGGAACATGGGAGGA-TCGACTCTTGTAGTTGAACCTGTTGTGCCGCGA-CCC 681 || |||| | || ||||||||| | || ||||||||||||| ||||| || || ||| Sbjct 781 AAATGGATGTAAAATGGGAGGAAT-GAATCTTGTAGTTGAATCTGTTTTGATA-GAACCC 838 Query 682 GAT-ATCCTaaaaaaa-aGAAGG-C-CGC--TCG-C-CTGC--ACTA-C--TACTGGCTA 728 || | |||||||||| | |||| | ||| || | | || ||| | ||||||||| Sbjct 839 GAAGA-CCTAAAAAAAGAAAAGGGCGCGCCATCATCAC-GCCTACTGGCCATACTGGCTA 896 Query 729 TACTCTCCC-AAGTAT-TTTACTTG-A-GGTGGCTaag---aagaagaagaagatggaga 781 ||| | || |||| | |||| | | | || | | || ||||||||||||||||||| Sbjct 897 TACGC-CCTTAAGT-TGTTTA-T-GCAAGGCGTATGAGCTTAAGAAGAAGAAGATGGAGA 952 Query 782 cagagaaggagaaggagaagga-gaaggagaaggagaaggagaag 825 |||| ||||| ||||| || || | ||||| ||||| ||||| Sbjct 953 TGGAGATGGAGATGGAGATGGGTGA-GAAGAAGAAGAAGAAGAAG 996 > AT5G53700.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:21801143-21802787 FORWARD LENGTH=1075 Length=1075 Score = 65.8 bits (35), Expect = 8e-10 Identities = 40/42 (95%), Gaps = 2/42 (5%) Strand=Plus/Plus Query 592 GGAGAAA-GATGTGTAGACAAGGCGCTGGAACTAAGTGGACG 632 ||| ||| |||||||||||||||||||||||||||||||||| Sbjct 610 GGA-AAAGGATGTGTAGACAAGGCGCTGGAACTAAGTGGACG 650 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46968927445 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5