BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905423

Length=960
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03480.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   486    1e-136
  AT5G03495.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   435    5e-121
  AT5G53700.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...  65.8    8e-10 


> AT5G03480.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:869208-870855 REVERSE LENGTH=966
Length=966

 Score =  486 bits (263),  Expect = 1e-136
 Identities = 500/609 (82%), Gaps = 38/609 (6%)
 Strand=Plus/Plus

Query  132  CACGACGGTTTCCGTTGAGGGATATGACACTTGGCTTCGAAAGTATCCTCTCAAACTCGT  191
            ||||||| | |||||||||||||||||||||| ||||| |||||||| |||| | ||| |
Sbjct  336  CACGACGATCTCCGTTGAGGGATATGACACTTCGCTTCAAAAGTATCTTCTCGAGCTCAT  395

Query  192  GTTGGAAAAACATTTCGCTTCATGCGGAGAGATCACAAATATTTATGTACCCACAGACTT  251
             |||||||||||||||| ||||||||||||||| | | || ||||||| |||||||||| 
Sbjct  396  CTTGGAAAAACATTTCGATTCATGCGGAGAGATTAGACATGTTTATGTTCCCACAGACTA  455

Query  252  TGAAAGGGGTATCCTCAAGAGTGTTGCCTTCATGAGGATCGAGGGAGAAGGTGCCGAAGA  311
            |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  456  TGAAAGGGGTGTCCTCAAGAGTGTTGCCTTCTTGAGGATCGAGGGAGAAGGTGCCGAAGA  515

Query  312  AAAGGCATTGCAACTTAGTGGAACTGACATCGGAGGATGGACTGCTATCGTTAAGCCTGC  371
             ||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||   
Sbjct  516  CAAGGCATTGCAACTTAGTGGAACTGACGTTGTAGGATGGACTGTTATCGTTAAGCC---  572

Query  372  ACCCTGGCAGAAAGTATTC-ATGGATGATCCTAGGTATGCTGGTCCTAGGTGTGCTGCTG  430
            | || |  | ||  ||||| ||| || || ||  |  ||||   ||| |     || || 
Sbjct  573  ATCC-G--A-AA--TATTCTATG-ATAATTCTTCGCGTGCT---CCT-GCAA--CTACTC  619

Query  431  CTCCCGCCGATACCAAAACACACATGATCCGCATTACCGGATATGACACTTCGCTTCCTA  490
            ||   ||  || |||||| ||||| | ||||  |||| ||||||||| ||||||||||| 
Sbjct  620  CTGAGGC--AT-CCAAAATACACAGGTTCCGTGTTACGGGATATGACGCTTCGCTTCCTG  676

Query  491  AGATTGATATGCAGATCGCGCTGTATAAACATTTCTCCTCATGTGGATCA-ATCTGGAAA  549
            |||||||||| ||||| || |||| |||||||||||| |||||||||  | |||||| ||
Sbjct  677  AGATTGATATCCAGATGGCTCTGTGTAAACATTTCTCTTCATGTGGAG-AGATCTGGCAA  735

Query  550  GTTATAGTTCTCAAAAGCGGTGCAGCTTTTATTTATCTT-GAAGGAGAAAGATGTGTAGA  608
            |||| |||||||   ||   | |||||||  ||| |||| || |||||||||||||||||
Sbjct  736  GTTACAGTTCTCTCTAG---TACAGCTTTCGTTTCTCTTAGA-GGAGAAAGATGTGTAGA  791

Query  609  CAAGGCGCTGGAACTAAGTGGACGGAACATGGGAGGATCGACTCTTGTAGTT---GAACC  665
            |||||||||||||||||||||| | |||||||||| |  |||||||||||||   |||||
Sbjct  792  CAAGGCGCTGGAACTAAGTGGATGTAACATGGGAGAAAGGACTCTTGTAGTTAATGAACC  851

Query  666  TGTTGTGCCGCGACCCGATA-TCCTaaaaa-aaaGAAGGC--CGCTCGCCTGCACTACTA  721
            ||||||||||| |||||| | || |||||| ||| ||||   ||| | | |||||||| |
Sbjct  852  TGTTGTGCCGCAACCCGA-ACTCTTAAAAAGAAA-AAGGGTACGC-CAC-TGCACTACCA  907

Query  722  CTGGCTATA  730
            |||||||||
Sbjct  908  CTGGCTATA  916


 Score =  255 bits (138),  Expect = 4e-67
 Identities = 211/245 (86%), Gaps = 10/245 (4%)
 Strand=Plus/Plus

Query  130  AGCACGACGGTTTCCGTTGAGGGATATGACACTTGGCTTCGAA--AGTATCCTCTCAAAC  187
            |||||| |  ||| |||||| ||||||||||||| ||||  ||  ||||||||||||  |
Sbjct  67   AGCACGGCTATTTGCGTTGAAGGATATGACACTTCGCTT--AAGGAGTATCCTCTCAGGC  124

Query  188  TCGTGTTGGA-AAAACATTTCGCTTCATGCGGAGAGATCACA-AATATTTATGTACCCAC  245
            | | ||| || ||||||||||||||||||||||||||||||| || |||||||| || | 
Sbjct  125  TGGCGTT-GACAAAACATTTCGCTTCATGCGGAGAGATCACACAA-ATTTATGTTCCAAG  182

Query  246  AGACTTTGAAAGGGGTATCCTCAAGAGTGT-TGCCTTCATGAGGATCGAGGGAGAAGGTG  304
            ||||||| ||| |   |||||||||||||| | |||||||| ||||| ||||||||||||
Sbjct  183  AGACTTTAAAAAGAAAATCCTCAAGAGTGTCT-CCTTCATGTGGATCAAGGGAGAAGGTG  241

Query  305  CCGAAGAAAAGGCATTGCAACTTAGTGGAACTGACATCGGAGGATGGACTGCTATCGTTA  364
            ||||||| ||||||||||||||||||||||||||| | ||||||||||||| ||||||||
Sbjct  242  CCGAAGACAAGGCATTGCAACTTAGTGGAACTGACGTGGGAGGATGGACTGTTATCGTTA  301

Query  365  AGCCT  369
            |||||
Sbjct  302  AGCCT  306


> AT5G03495.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:873331-875251 REVERSE LENGTH=1290
Length=1290

 Score =  435 bits (235),  Expect = 5e-121
 Identities = 600/765 (78%), Gaps = 69/765 (9%)
 Strand=Plus/Plus

Query  92   acgatagtggtgCAGACTCTC-AAACTCCCCGTATCTCC-AGCACGACGGTTTCCGTTGA  149
            |||| | ||||||| |||||| |||  ||||||||| ||  | |||| | ||||||| ||
Sbjct  270  ACGAGATTGGTGCAAACTCTCGAAA-GCCCCGTATC-CCTTGGACGAAGATTTCCGTGGA  327

Query  150  GGGATATGACACTTGGCTTCGAAAGTATCCTCTCAAACTCGTGTTGGAAAAACATTTCGC  209
            ||||||||||||| |||| ||  ||||| |  |||| |||||||||||||||||||||||
Sbjct  328  GGGATATGACACTAGGCTCCGTGAGTATACAGTCAAGCTCGTGTTGGAAAAACATTTCGC  387

Query  210  TTCATGCGGAGAGATCACAAATATTTATGTACCCACAGACTTTGAAAGGGGTATCCTCAA  269
            |||||||||| |||||||| |||||||||| |||| ||||||||||||||||||||||||
Sbjct  388  TTCATGCGGAAAGATCACACATATTTATGTTCCCAGAGACTTTGAAAGGGGTATCCTCAA  447

Query  270  GAGTGTTGCCTTCATGAGGATCGAGGGAGAAGGTGCCGAAGAAAAGGCATTGCAACTTAG  329
            |||||| ||||||||| | ||| | |||||||||| |||||||||||||||||  |||||
Sbjct  448  GAGTGTCGCCTTCATGTGTATCAAAGGAGAAGGTGGCGAAGAAAAGGCATTGCTGCTTAG  507

Query  330  TGGAACTGACATCGG-AGGATGGACTGCTATCGTTAAGCCTGCACCCTGGCAGAAAGTAT  388
            ||||||||||  ||| |||||||||||| |||||||||||||||| ||||||||||| | 
Sbjct  508  TGGAACTGACG-CGGGAGGATGGACTGCAATCGTTAAGCCTGCACTCTGGCAGAAAGAAA  566

Query  389  TCATGGATGATCCTAGGTATGCTGGTCCTAGGTGTGCTGCTGCTCCCGCCGATACCAAAA  448
            ||||||||   ||| ||    ||  |||| ||    |   ||| ||   |  |   ||| 
Sbjct  567  TCATGGAT---CCTTGG----CT--TCCT-GG----CA--TGC-CCAAACT-TG--AAA-  605

Query  449  CACACATGATCCGCATTACCGGATATGACACTTC-GCTTCCTAAGATTGATATGCAGATC  507
            |||||| | ||||| |||| |||||||||||||  | |||||||||||||||| ||||| 
Sbjct  606  CACACAGGGTCCGCGTTACGGGATATGACACTTGTG-TTCCTAAGATTGATATCCAGATG  664

Query  508  GCGCT-GTATAAACATTTCTCCTCATGTGGATCAA-TCTGGAAAGTTATAGTTCT-CAAA  564
            || || || | |||||||||| |||||||||  |  ||  | ||||| | ||||| |  |
Sbjct  665  GC-CTTGTGTGAACATTTCTCTTCATGTGGAG-AGGTCACGCAAGTTGTGGTTCTGCCTA  722

Query  565  AGCGGTGCAGCTTTTATTTATCTTGAAGGAGAAAGATGTGTAG-ACAAGGCGCTGGAACT  623
             ||||| ||| ||  ||||||||| ||||||||||||||| || ||||||||||  ||||
Sbjct  723  -GCGGTTCAGGTTCCATTTATCTTCAAGGAGAAAGATGTG-AGGACAAGGCGCTTCAACT  780

Query  624  AAGTGGACGGAACATGGGAGGA-TCGACTCTTGTAGTTGAACCTGTTGTGCCGCGA-CCC  681
            || |||| | || ||||||||| | || ||||||||||||| ||||| ||    || |||
Sbjct  781  AAATGGATGTAAAATGGGAGGAAT-GAATCTTGTAGTTGAATCTGTTTTGATA-GAACCC  838

Query  682  GAT-ATCCTaaaaaaa-aGAAGG-C-CGC--TCG-C-CTGC--ACTA-C--TACTGGCTA  728
            ||  | |||||||||| | |||| | |||  ||  | | ||  |||  |  |||||||||
Sbjct  839  GAAGA-CCTAAAAAAAGAAAAGGGCGCGCCATCATCAC-GCCTACTGGCCATACTGGCTA  896

Query  729  TACTCTCCC-AAGTAT-TTTACTTG-A-GGTGGCTaag---aagaagaagaagatggaga  781
            ||| | ||  |||| | |||| | | | || |  | ||   |||||||||||||||||||
Sbjct  897  TACGC-CCTTAAGT-TGTTTA-T-GCAAGGCGTATGAGCTTAAGAAGAAGAAGATGGAGA  952

Query  782  cagagaaggagaaggagaagga-gaaggagaaggagaaggagaag  825
              |||| ||||| ||||| ||  || | ||||| ||||| |||||
Sbjct  953  TGGAGATGGAGATGGAGATGGGTGA-GAAGAAGAAGAAGAAGAAG  996


> AT5G53700.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr5:21801143-21802787 FORWARD LENGTH=1075
Length=1075

 Score = 65.8 bits (35),  Expect = 8e-10
 Identities = 40/42 (95%), Gaps = 2/42 (5%)
 Strand=Plus/Plus

Query  592  GGAGAAA-GATGTGTAGACAAGGCGCTGGAACTAAGTGGACG  632
            ||| ||| ||||||||||||||||||||||||||||||||||
Sbjct  610  GGA-AAAGGATGTGTAGACAAGGCGCTGGAACTAAGTGGACG  650



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 46968927445


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5