BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905423
Length=960
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03480.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 486 1e-136
AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 435 5e-121
AT5G53700.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 65.8 8e-10
> AT5G03480.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:869208-870855 REVERSE LENGTH=966
Length=966
Score = 486 bits (263), Expect = 1e-136
Identities = 500/609 (82%), Gaps = 38/609 (6%)
Strand=Plus/Plus
Query 132 CACGACGGTTTCCGTTGAGGGATATGACACTTGGCTTCGAAAGTATCCTCTCAAACTCGT 191
||||||| | |||||||||||||||||||||| ||||| |||||||| |||| | ||| |
Sbjct 336 CACGACGATCTCCGTTGAGGGATATGACACTTCGCTTCAAAAGTATCTTCTCGAGCTCAT 395
Query 192 GTTGGAAAAACATTTCGCTTCATGCGGAGAGATCACAAATATTTATGTACCCACAGACTT 251
|||||||||||||||| ||||||||||||||| | | || ||||||| ||||||||||
Sbjct 396 CTTGGAAAAACATTTCGATTCATGCGGAGAGATTAGACATGTTTATGTTCCCACAGACTA 455
Query 252 TGAAAGGGGTATCCTCAAGAGTGTTGCCTTCATGAGGATCGAGGGAGAAGGTGCCGAAGA 311
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 456 TGAAAGGGGTGTCCTCAAGAGTGTTGCCTTCTTGAGGATCGAGGGAGAAGGTGCCGAAGA 515
Query 312 AAAGGCATTGCAACTTAGTGGAACTGACATCGGAGGATGGACTGCTATCGTTAAGCCTGC 371
||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||
Sbjct 516 CAAGGCATTGCAACTTAGTGGAACTGACGTTGTAGGATGGACTGTTATCGTTAAGCC--- 572
Query 372 ACCCTGGCAGAAAGTATTC-ATGGATGATCCTAGGTATGCTGGTCCTAGGTGTGCTGCTG 430
| || | | || ||||| ||| || || || | |||| ||| | || ||
Sbjct 573 ATCC-G--A-AA--TATTCTATG-ATAATTCTTCGCGTGCT---CCT-GCAA--CTACTC 619
Query 431 CTCCCGCCGATACCAAAACACACATGATCCGCATTACCGGATATGACACTTCGCTTCCTA 490
|| || || |||||| ||||| | |||| |||| ||||||||| |||||||||||
Sbjct 620 CTGAGGC--AT-CCAAAATACACAGGTTCCGTGTTACGGGATATGACGCTTCGCTTCCTG 676
Query 491 AGATTGATATGCAGATCGCGCTGTATAAACATTTCTCCTCATGTGGATCA-ATCTGGAAA 549
|||||||||| ||||| || |||| |||||||||||| ||||||||| | |||||| ||
Sbjct 677 AGATTGATATCCAGATGGCTCTGTGTAAACATTTCTCTTCATGTGGAG-AGATCTGGCAA 735
Query 550 GTTATAGTTCTCAAAAGCGGTGCAGCTTTTATTTATCTT-GAAGGAGAAAGATGTGTAGA 608
|||| ||||||| || | ||||||| ||| |||| || |||||||||||||||||
Sbjct 736 GTTACAGTTCTCTCTAG---TACAGCTTTCGTTTCTCTTAGA-GGAGAAAGATGTGTAGA 791
Query 609 CAAGGCGCTGGAACTAAGTGGACGGAACATGGGAGGATCGACTCTTGTAGTT---GAACC 665
|||||||||||||||||||||| | |||||||||| | ||||||||||||| |||||
Sbjct 792 CAAGGCGCTGGAACTAAGTGGATGTAACATGGGAGAAAGGACTCTTGTAGTTAATGAACC 851
Query 666 TGTTGTGCCGCGACCCGATA-TCCTaaaaa-aaaGAAGGC--CGCTCGCCTGCACTACTA 721
||||||||||| |||||| | || |||||| ||| |||| ||| | | |||||||| |
Sbjct 852 TGTTGTGCCGCAACCCGA-ACTCTTAAAAAGAAA-AAGGGTACGC-CAC-TGCACTACCA 907
Query 722 CTGGCTATA 730
|||||||||
Sbjct 908 CTGGCTATA 916
Score = 255 bits (138), Expect = 4e-67
Identities = 211/245 (86%), Gaps = 10/245 (4%)
Strand=Plus/Plus
Query 130 AGCACGACGGTTTCCGTTGAGGGATATGACACTTGGCTTCGAA--AGTATCCTCTCAAAC 187
|||||| | ||| |||||| ||||||||||||| |||| || |||||||||||| |
Sbjct 67 AGCACGGCTATTTGCGTTGAAGGATATGACACTTCGCTT--AAGGAGTATCCTCTCAGGC 124
Query 188 TCGTGTTGGA-AAAACATTTCGCTTCATGCGGAGAGATCACA-AATATTTATGTACCCAC 245
| | ||| || ||||||||||||||||||||||||||||||| || |||||||| || |
Sbjct 125 TGGCGTT-GACAAAACATTTCGCTTCATGCGGAGAGATCACACAA-ATTTATGTTCCAAG 182
Query 246 AGACTTTGAAAGGGGTATCCTCAAGAGTGT-TGCCTTCATGAGGATCGAGGGAGAAGGTG 304
||||||| ||| | |||||||||||||| | |||||||| ||||| ||||||||||||
Sbjct 183 AGACTTTAAAAAGAAAATCCTCAAGAGTGTCT-CCTTCATGTGGATCAAGGGAGAAGGTG 241
Query 305 CCGAAGAAAAGGCATTGCAACTTAGTGGAACTGACATCGGAGGATGGACTGCTATCGTTA 364
||||||| ||||||||||||||||||||||||||| | ||||||||||||| ||||||||
Sbjct 242 CCGAAGACAAGGCATTGCAACTTAGTGGAACTGACGTGGGAGGATGGACTGTTATCGTTA 301
Query 365 AGCCT 369
|||||
Sbjct 302 AGCCT 306
> AT5G03495.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:873331-875251 REVERSE LENGTH=1290
Length=1290
Score = 435 bits (235), Expect = 5e-121
Identities = 600/765 (78%), Gaps = 69/765 (9%)
Strand=Plus/Plus
Query 92 acgatagtggtgCAGACTCTC-AAACTCCCCGTATCTCC-AGCACGACGGTTTCCGTTGA 149
|||| | ||||||| |||||| ||| ||||||||| || | |||| | ||||||| ||
Sbjct 270 ACGAGATTGGTGCAAACTCTCGAAA-GCCCCGTATC-CCTTGGACGAAGATTTCCGTGGA 327
Query 150 GGGATATGACACTTGGCTTCGAAAGTATCCTCTCAAACTCGTGTTGGAAAAACATTTCGC 209
||||||||||||| |||| || ||||| | |||| |||||||||||||||||||||||
Sbjct 328 GGGATATGACACTAGGCTCCGTGAGTATACAGTCAAGCTCGTGTTGGAAAAACATTTCGC 387
Query 210 TTCATGCGGAGAGATCACAAATATTTATGTACCCACAGACTTTGAAAGGGGTATCCTCAA 269
|||||||||| |||||||| |||||||||| |||| ||||||||||||||||||||||||
Sbjct 388 TTCATGCGGAAAGATCACACATATTTATGTTCCCAGAGACTTTGAAAGGGGTATCCTCAA 447
Query 270 GAGTGTTGCCTTCATGAGGATCGAGGGAGAAGGTGCCGAAGAAAAGGCATTGCAACTTAG 329
|||||| ||||||||| | ||| | |||||||||| ||||||||||||||||| |||||
Sbjct 448 GAGTGTCGCCTTCATGTGTATCAAAGGAGAAGGTGGCGAAGAAAAGGCATTGCTGCTTAG 507
Query 330 TGGAACTGACATCGG-AGGATGGACTGCTATCGTTAAGCCTGCACCCTGGCAGAAAGTAT 388
|||||||||| ||| |||||||||||| |||||||||||||||| ||||||||||| |
Sbjct 508 TGGAACTGACG-CGGGAGGATGGACTGCAATCGTTAAGCCTGCACTCTGGCAGAAAGAAA 566
Query 389 TCATGGATGATCCTAGGTATGCTGGTCCTAGGTGTGCTGCTGCTCCCGCCGATACCAAAA 448
|||||||| ||| || || |||| || | ||| || | | |||
Sbjct 567 TCATGGAT---CCTTGG----CT--TCCT-GG----CA--TGC-CCAAACT-TG--AAA- 605
Query 449 CACACATGATCCGCATTACCGGATATGACACTTC-GCTTCCTAAGATTGATATGCAGATC 507
|||||| | ||||| |||| ||||||||||||| | |||||||||||||||| |||||
Sbjct 606 CACACAGGGTCCGCGTTACGGGATATGACACTTGTG-TTCCTAAGATTGATATCCAGATG 664
Query 508 GCGCT-GTATAAACATTTCTCCTCATGTGGATCAA-TCTGGAAAGTTATAGTTCT-CAAA 564
|| || || | |||||||||| ||||||||| | || | ||||| | ||||| | |
Sbjct 665 GC-CTTGTGTGAACATTTCTCTTCATGTGGAG-AGGTCACGCAAGTTGTGGTTCTGCCTA 722
Query 565 AGCGGTGCAGCTTTTATTTATCTTGAAGGAGAAAGATGTGTAG-ACAAGGCGCTGGAACT 623
||||| ||| || ||||||||| ||||||||||||||| || |||||||||| ||||
Sbjct 723 -GCGGTTCAGGTTCCATTTATCTTCAAGGAGAAAGATGTG-AGGACAAGGCGCTTCAACT 780
Query 624 AAGTGGACGGAACATGGGAGGA-TCGACTCTTGTAGTTGAACCTGTTGTGCCGCGA-CCC 681
|| |||| | || ||||||||| | || ||||||||||||| ||||| || || |||
Sbjct 781 AAATGGATGTAAAATGGGAGGAAT-GAATCTTGTAGTTGAATCTGTTTTGATA-GAACCC 838
Query 682 GAT-ATCCTaaaaaaa-aGAAGG-C-CGC--TCG-C-CTGC--ACTA-C--TACTGGCTA 728
|| | |||||||||| | |||| | ||| || | | || ||| | |||||||||
Sbjct 839 GAAGA-CCTAAAAAAAGAAAAGGGCGCGCCATCATCAC-GCCTACTGGCCATACTGGCTA 896
Query 729 TACTCTCCC-AAGTAT-TTTACTTG-A-GGTGGCTaag---aagaagaagaagatggaga 781
||| | || |||| | |||| | | | || | | || |||||||||||||||||||
Sbjct 897 TACGC-CCTTAAGT-TGTTTA-T-GCAAGGCGTATGAGCTTAAGAAGAAGAAGATGGAGA 952
Query 782 cagagaaggagaaggagaagga-gaaggagaaggagaaggagaag 825
|||| ||||| ||||| || || | ||||| ||||| |||||
Sbjct 953 TGGAGATGGAGATGGAGATGGGTGA-GAAGAAGAAGAAGAAGAAG 996
> AT5G53700.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:21801143-21802787 FORWARD LENGTH=1075
Length=1075
Score = 65.8 bits (35), Expect = 8e-10
Identities = 40/42 (95%), Gaps = 2/42 (5%)
Strand=Plus/Plus
Query 592 GGAGAAA-GATGTGTAGACAAGGCGCTGGAACTAAGTGGACG 632
||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 610 GGA-AAAGGATGTGTAGACAAGGCGCTGGAACTAAGTGGACG 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46968927445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5