BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905426
Length=462
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03500.1 | Symbols: | Mediator complex, subunit Med7 | chr5... 636 0.0
AT5G03220.1 | Symbols: | Mediator complex, subunit Med7 | chr5... 630 3e-180
> AT5G03500.1 | Symbols: | Mediator complex, subunit Med7 | chr5:876521-878336
REVERSE LENGTH=885
Length=885
Score = 636 bits (344), Expect = 0.0
Identities = 387/408 (95%), Gaps = 1/408 (0%)
Strand=Plus/Plus
Query 52 TCC-ATTGAAGGCACCTACGTTTGTTTCGGAGGCAACTATACTACGGAGGATGTTCTTCC 110
||| ||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||
Sbjct 319 TCCGATTGAAGGCACCTACGTCTGTTTTGGAGGCAACTATACTACTGAAGATGTTCTTCC 378
Query 111 GAGCTTAGAAGAACAAGGAGTGCCTCAACTTTATCCCAAAGATTCTAATGTTGATTACAA 170
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 379 AAGCTTAGAAGAACAAGGAGTGCCTCAACTTTATCCAAAAGATTCTAATCTTGATTACAA 438
Query 171 GAAGGAACTCAGGTCGTTGAATAGAGAACTACAGTTACATATACTGGAGCTTGCTGATGT 230
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 439 GAAGGAACTCAGGTCACTGAATAGAGAACTACAGTTACATATATTGGAGCTTGCTGATGT 498
Query 231 TCTTGTTGATAGACCTTCTCAATATGCAAAGAGGATTGGTGAAATTTCTTCAATCTTCAA 290
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 499 TCTTGTTGACAGACCTTCTCAATATGCGAAGAGAATTGGTGAAATTTCTTCAATCTTCAA 558
Query 291 GAATTTGCATCACCTTCTCAATTCCTTGAGGCCTCACCAAGCGAGAGCAACGCTTATTCA 350
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 559 GAACTTGCATCACCTTCTCAATTCCTTGAGGCCTCACCAAGCGAGAGCAACGCTTATTCA 618
Query 351 CATTATGGAACTTCAAATTCAACAGAGGAAACAAGCCGTGGAAGACATTAAGAGGAGAAG 410
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 619 CATTATGGAACTTCAAATTCAACAGAGGAAACAAGCTGTGGAAGACATTAAGAGGAGGAG 678
Query 411 AGAAGAAGCACAACGACTTCTAAAGGATGCTTTCGTCGCTTTGGATGG 458
||||||||||||| ||||||| ||||||||||||||| |||| |||||
Sbjct 679 AGAAGAAGCACAAGGACTTCTTAAGGATGCTTTCGTCACTTTAGATGG 726
> AT5G03220.1 | Symbols: | Mediator complex, subunit Med7 | chr5:767489-768857
REVERSE LENGTH=736
Length=736
Score = 630 bits (341), Expect = 3e-180
Identities = 386/408 (95%), Gaps = 1/408 (0%)
Strand=Plus/Plus
Query 52 TCC-ATTGAAGGCACCTACGTTTGTTTCGGAGGCAACTATACTACGGAGGATGTTCTTCC 110
||| ||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||
Sbjct 194 TCCGATTGAAGGCACCTACGTCTGTTTTGGAGGCAACTATACTACTGAAGATGTTCTTCC 253
Query 111 GAGCTTAGAAGAACAAGGAGTGCCTCAACTTTATCCCAAAGATTCTAATGTTGATTACAA 170
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 254 AAGCTTAGAAGAACAAGGAGTGCCTCAACTTTATCCCAAAGATTCTAATCTTGATTACAA 313
Query 171 GAAGGAACTCAGGTCGTTGAATAGAGAACTACAGTTACATATACTGGAGCTTGCTGATGT 230
||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 314 GAATGAACTCAGGTCACTGAATAGAGAACTACAGTTACATATATTGGAGCTTGCTGATGT 373
Query 231 TCTTGTTGATAGACCTTCTCAATATGCAAAGAGGATTGGTGAAATTTCTTCAATCTTCAA 290
||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 374 TCTTGTTGACAGACCTTCTCAATATGCGAAGAGGATTGGTGAAATTTCTTCTATCTTCAA 433
Query 291 GAATTTGCATCACCTTCTCAATTCCTTGAGGCCTCACCAAGCGAGAGCAACGCTTATTCA 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 GAATTTGCATCACCTTCTCAATTCCTTGAGGCCTCACCAAGCGAGAGCAACGCTTATTCA 493
Query 351 CATTATGGAACTTCAAATTCAACAGAGGAAACAAGCCGTGGAAGACATTAAGAGGAGAAG 410
|||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||
Sbjct 494 CATTATGGAACTTCAAATTCAACAGAGGAAACAAGCTGTGGAAGACATTAAAAGAAGAAG 553
Query 411 AGAAGAAGCACAACGACTTCTAAAGGATGCTTTCGTCGCTTTGGATGG 458
|||||||||||| ||||||||||||||||||| | || |||| |||||
Sbjct 554 AGAAGAAGCACAGCGACTTCTAAAGGATGCTTACCTCACTTTAGATGG 601
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22017274062
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5