BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905429

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G24120.1 | Symbols: YSL1, ATYSL1 | YELLOW STRIPE like 1 | ch...   213    1e-54


> AT4G24120.1 | Symbols: YSL1, ATYSL1 | YELLOW STRIPE like 1 | 
chr4:12524491-12527341 FORWARD LENGTH=2430
Length=2430

 Score =  213 bits (115),  Expect = 1e-54
 Identities = 125/130 (96%), Gaps = 0/130 (0%)
 Strand=Plus/Plus

Query  413  AATCAACAGTCACTGCAAGAAGAAGAACCAGAAACAGAGGAAGAGATGTCTGGGAGGACA  472
            |||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  148  AATCAACTTTCACTGCAAGAAGAAGAACCAGATACAGAGGAAGAGATGTCTGGGAGGACA  207

Query  473  ATCGAACCGTGGACGAAGCAGATAACGGTGAGAGGAGTGTTAGTGAGCATAGCGATCGGA  532
            ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct  208  ATCGAACCGTGGACGAAGCAGATAACGGTGAGAGGAGTGTTCGTGAGCATAGTGATCGGA  267

Query  533  GTTGTGTTCA  542
            ||||||||||
Sbjct  268  GTTGTGTTCA  277



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26171990587


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5