BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905436
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23690.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1770 0.0
> AT3G23690.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:8528632-8531012 REVERSE LENGTH=1774
Length=1774
Score = 1770 bits (958), Expect = 0.0
Identities = 1076/1130 (95%), Gaps = 19/1130 (2%)
Strand=Plus/Plus
Query 1 ATGAACATGGACAAGGAAACAGAGCAAACCCTAAATTACTTACCTTTGGGTCAGAGCGAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ATGAACATGGACAAGGAAACAGAGCAAACCCTAAATTACTTACCTTTGGGTCAGAGCGAT 417
Query 61 CCCTTTGGCAATGGCAGTGAAGGAACTATCGGAGATTTCCTTGGAAGATACTGCAACAAC 120
|||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||
Sbjct 418 CCCTTTGGCAATGGCAATGAAGGAACAATTGGAGATTTCCTTGGAAGATACTGCAACAAC 477
Query 121 CCTCAAGAGATTTCACCGTTAACTCTACAATCTTTCTCTATGAATTCTCAGATCTCTGAG 180
||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| |||
Sbjct 478 CCTCAGGAGATTTCACCGTTAACTCTACAATCCTTCTCTCTGAATTCTCAGATCTCCGAG 537
Query 181 AATTTCCCAATCTCTGGTGGAATCCGATTCCCTCCGTATCCAGGTCAATTTGGATCCGAT 240
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 538 AATTTCCCAATCTCTGGTGGAATCAGATTCCCTCCATATCCAGGTCAATTTGGATCCGAT 597
Query 241 CGAGAATTTGGGGTTCTTGGGTCACAACCAACAACGCAAGAGAGTAACAAAAGCTCGTTG 300
|| ||| | |||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct 598 CGTGAA--------T-TTGGGTCACAACCAACAACGCAGGAGAGTAACAAGAGCTCTTTG 648
Query 301 TTGGATCCAGATTCAGTTTCGGATCGAGTTCACACCACGAAATCTCACTCCAGGAAGAGG 360
||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct 649 TTGGATCCAGATTCAGTTTCGGATCGAGTTCACACCACGAAATCTAACTCTAGAAAGAGG 708
Query 361 AAATCGATTCCTAGTGGTAATGGCAAGGAGTCTCCAGCTTCTTCCTCTCTTACAGCTTCC 420
|| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 709 AAGTCGATTCCTAGTGGTAATGGCAAGGAGTCTCCAGCTTCATCGTCTCTTACAGCTTCC 768
Query 421 AATTCAAAGGTTTCAGGAGAGAATGGTGGATCTAAAGGTGGGAAGAGAAGTAAGCAAGAT 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 769 AATTCAAAGGTTTCAGGAGAGAATGGTGGATCTAAAGGTGGGAAGAGAAGCAAGCAAGAT 828
Query 481 G-AGGCTGGGAGTAGTAAAAACGGAGTAGAGAAGTGCGATAGTAAAGGCGACAATAAGGA 539
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GTA-GCTGGGAGTAGTAAAAACGGAGTAGAGAAGTGCGATAGTAAAGGCGACAATAAGGA 887
Query 540 CGATGCTAAGCCTCCTGAGGCGCCTAAAGATTATATTCATGTTAGAGCTAGAAGGGGTCA 599
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 888 CGATGCTAAGCCTCCTGAGGCGCCTAAAGATTATATTCATGTCAGAGCTAGAAGGGGTCA 947
Query 600 AGCAACTGATAGCCATAGTCTTGCTGAAAGAGCAAGAAGAGAAAAGATCAGCGAGAGAAT 659
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 948 AGCAACTGATAGCCATAGTCTTGCTGAAAGAGCAAGAAGAGAAAAGATTAGTGAGAGAAT 1007
Query 660 GACGTTGCTTCAGGATCTGGTTCCTGGTTGCAACCGGATTACAGGGAAAGCGGTCATGCT 719
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1008 GACGTTGCTTCAGGATCTGGTTCCTGGTTGCAACCGGATTACAGGGAAAGCAGTCATGCT 1067
Query 720 TGACGAAATTATAAATTATGTGCAGTCCTTGCAGAGACAAGTTGAGTTCTTGTCCATGAA 779
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 TGATGAAATTATAAATTATGTGCAGTCCTTGCAGAGACAAGTTGAGTTCTTGTCCATGAA 1127
Query 780 GCTGGCTACTGTAAATCCAAGGATGGAGTTTAATGCTAATGCTGCTTTATCCACAGAGAT 839
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1128 GCTGGCTACCGTAAATCCAAGGATGGAGTTTAATGCTAATGCTTCTTTATCCACAGAGAT 1187
Query 840 GATTCAACCGGGGGAGTCGTTAACGCAGTCTCTTTACGCAATGGCTTGCTCAGAGCAAAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GATTCAACCGGGGGAGTCGTTAACGCAGTCTCTTTACGCAATGGCTTGCTCAGAGCAAAG 1247
Query 900 ACTTCCATCAGCATACTATTCCCTTGGCAAGAACATGCCCAGATTCTCAGACACACAATT 959
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1248 ACTTCCATCAGCATACTATTCACTTGGCAAGAACATGCCAAGATTCTCAGACACACAATT 1307
Query 960 CCCCTCAAACGATGGATTTGTTCA-AGCTGAGACACCGGGATTCTGGGAAAATAATGACC 1018
|||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||
Sbjct 1308 CCCCTCAAACGATGGATTTGTTCACA-CTGAGACACCAGGATTCTGGGAAAATAATGACC 1366
Query 1019 TGCAAAGCATTGTTCAAATGGGGTTTGGAGATATCC---AGCAACAGAGCAACAACAACA 1075
|||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1367 TGCAAAGCATTGTTCAGATGGGTTTTGGAGATATCCTCCAGCAACAGAGCAACAACAACA 1426
Query 1076 ACTGTAAGAAAAGTTCTGAGCCAACGCTTCAGATGAAGCTTGAACCATAG 1125
|| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 1427 AC---AACAACTGTTCTGAGCCAACGCTTCAGATGAAGCTTGAACCATAG 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5