BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905451
Length=633
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23800.1 | Symbols: SBP3 | selenium-binding protein 3 | chr3... 918 0.0
> AT3G23800.1 | Symbols: SBP3 | selenium-binding protein 3 | chr3:8581654-8583835
FORWARD LENGTH=1621
Length=1621
Score = 918 bits (497), Expect = 0.0
Identities = 562/593 (95%), Gaps = 5/593 (1%)
Strand=Plus/Plus
Query 1 TCAGTACCTCTTGGGGAGCACC-ACCAGCGTTTACCAAAGGATTTGACCTCAAAGACAGT 59
|||||||||| |||||||| || || |||||||||||||||||||||||||||||| ||
Sbjct 667 TCAGTACCTCATGGGGAGCCCCGGCC-GCGTTTACCAAAGGATTTGACCTCAAAGAC-GT 724
Query 60 CTCTGATGGCTTGTATGGAAAACATCTACATGTCTATAGTTGGCCCGAAGGAGAATTGAA 119
|||||||||||| |||||||| ||||||||||||||||| |||||| |||||||||||||
Sbjct 725 CTCTGATGGCTTATATGGAAAGCATCTACATGTCTATAGCTGGCCCCAAGGAGAATTGAA 784
Query 120 ACAGATACTTGACCTTGGTGATACCGGACTTTTACCCTTAGAGGTAAGATTCTTGCACGA 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 785 ACAGATTCTTGACCTTGGTGATACCGGACTTTTACCCTTAGAGGTAAGATTCTTGCATGA 844
Query 180 CCCGGATAAAGCTACGGGATTTGCGGGGTGCGCGTTGTCGAGTACTATGGTAAGATTTTT 239
||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||||
Sbjct 845 GCCGGATAAAGCTACGGGATTTGCAGGGTGTGCGTTGTCGAGTACTTTAGTAAGATTTTT 904
Query 240 CAAGAACGATGATGAAACATGGAGCCACGAGGTGGCTATATCAGTGGAACCTCTGAAAGT 299
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 905 CAAGAACGATGATGAAACATGGAGCCACGAGGTGGCTATATCAGTTGAACCTCTGAAAGT 964
Query 300 TGAAAACTGGATTCTCCCAGAAATGCCAACACTTATCACCGACTTTCTAATCTCACTTGA 359
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 965 TGAAAACTGGATTCTCCCAGAAATGCCAGGGCTTATCACCGACTTTCTAATCTCACTTGA 1024
Query 360 CGACCGATTCCTCTATTGTTCCAACTGGCTTCATGGAGATATTCGTCAGTACAACATCGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1025 CGACCGATTCCTCTATTGTTCCAACTGGCTTCATGGAGATATTCGTCAGTACAACATCGA 1084
Query 420 GGACCCGAAAACCCCTGTTTTAACCGGTCAACTACACGTTGGCGGGCTAGTCCAAAAGGG 479
|||||||||||||||||||||||| |||||| |||| || ||||||||||||||||||||
Sbjct 1085 GGACCCGAAAACCCCTGTTTTAACTGGTCAAATACATGTAGGCGGGCTAGTCCAAAAGGG 1144
Query 480 AAGCCATGTCTTGGCCTTAGGAGAAGAAGGCAA-GACATTTCAGTTCGATGTCCCTAAGA 538
||| | |||||||||||||||||||||||| || | |||||||||| |||||||||||||
Sbjct 1145 AAGTCTTGTCTTGGCCTTAGGAGAAGAAGGAAAAG-CATTTCAGTTTGATGTCCCTAAGA 1203
Query 539 TCAAGGGTCAGCGTCTAAGAGGAGGTCCTCAGATGTTTCAGCTGAGCCTAGAT 591
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 TCAAGGGTCAGCGTCTAAGAGGAGGTCCTCAGATGTTTCAGCTGAGCCTAGAT 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30542361376
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5