BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905490
Length=1008
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24130.1 | Symbols: | Pectin lyase-like superfamily protein... 1618 0.0
AT5G18990.1 | Symbols: | Pectin lyase-like superfamily protein... 1088 0.0
> AT3G24130.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:8711663-8713424 REVERSE LENGTH=1071
Length=1071
Score = 1618 bits (876), Expect = 0.0
Identities = 965/1009 (96%), Gaps = 2/1009 (0%)
Strand=Plus/Plus
Query 1 ATGGGAACTCATCGAATTTTCATAGGTCTTATCGCTCTTTGTTGTTTTTGTTTACCTCAT 60
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 64 ATGGGAACTCATCGAATTTTCATAGGTCTCATCGCTCTTTGTTGTTTTTGTCTACCTCAC 123
Query 61 CTCATTGAAGCTAAACCATTCGGAGTATACCAACAACAAGTGTTCGTGGATCAATCGGGC 120
|||||||||||||| |||||||||||||||||||||||||| || || |||||||| |||
Sbjct 124 CTCATTGAAGCTAAGCCATTCGGAGTATACCAACAACAAGTATTTGTTGATCAATCCGGC 183
Query 121 CATGGAAATTTCACGACAATACAAAAAGCTATTGATTCTGTTCCAATCAACAATCGTCAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 CATGGAAATTTCACGACAATACAAAAAGCTATTGATTCTGTTCCAATCAACAATCGTCAT 243
Query 181 TGGTTCTTCATCAACGTTAAAGCTGGCCTTTACAGAGAGAAAATAAAGATACCGTATGAA 240
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 244 TGGTTCTTCATCAACGTTAAAGCCGGTCTTTACAGAGAGAAAATAAAGATACCGTATGAA 303
Query 241 AAACCGTTCATAGTATTAGTAGGAGCTGGGAAGAGGTTAACGAGAGTTGAATGGGACGAC 300
||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||
Sbjct 304 AAACCGTTCATAGTACTAGTAGGAGCTGGAAAAAGGTTAACGAGAGTTGAATGGGACGAC 363
Query 301 CATTACTCGGTTGCACAAAGCCCTACCTTTTCTACTCTAGCCGATAACACCGTCGTTAAA 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 364 CATTACTCGGTTGCACAAAGCCCTACCTTTTCTACTCTTGCCGATAACACCGTTGTTAAA 423
Query 361 AGCATCACTTTCGCCAATTCATACAACTTTCC-TAGCAAAGGGAAAATGAACAAGAACCC 419
|||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||
Sbjct 424 AGCATCACTTTCGCCAATTCCTATAA-TTTCCCTAGCAAAGGGAAAATGAACAAGAACCC 482
Query 420 TAGAACTCCAGCCGTAGCCGCGTTGATAGGTGGCGATAAGTCAGCTTTCTACTCTGTAGG 479
||||||||||||||| || ||||||||||| ||||||||||| ||||| ||||| |||||
Sbjct 483 TAGAACTCCAGCCGTGGCAGCGTTGATAGGCGGCGATAAGTCGGCTTTTTACTCGGTAGG 542
Query 480 GTTTGCTGGAATTCAAGATACCTTGTGGGACTCGGATGGTAGGCACTACTTCCACCGGTG 539
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 543 GTTTGCTGGAATTCAAGATACCTTGTGGGACTTTGATGGCCGGCACTACTTCCACCGGTG 602
Query 540 TACCATACAAGGCGCGGTCGATTTCATCTTTGGTAGCGGCCAATCTATTTACCAGAGTTG 599
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||
Sbjct 603 TACCATACAAGGCGCGGTCGATTTCATCTTTGGTACCGGTCAATCTATTTACCAGAGCTG 662
Query 600 TGTGATACAAGTGCTAGGTGGGCAGCTAGAACCGGGGCTAGCGGGTTACATAACGGCTCA 659
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 663 TGTGATACAAGTGCTAGGTGGGCAGCTAGAACCGGGGCTAGCCGGTTACATAACGGCTCA 722
Query 660 AGGACGGACCAACCCGTACGATGCAAATGGATTCATCTTCATCAACTGCCTTGTATATGG 719
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 723 AGGACGGACCAACCCGTACGATGCAAATGGATTCATCTTCATCAACTGCCTCGTATATGG 782
Query 720 AACGGGCATGGCCTTCTTGGGCAGGCCGTGGCGCGGTTACTCTCGAGTGATTTTTTACAA 779
||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 783 AACAGGCATGGCCTTCTTGGGCAGGCCGTGGCGCGGTTATTCTCGAGTGATCTTTTACAA 842
Query 780 CTCGAACCTGACCGATGTAGTTGTTCCTGAAGGATGGGACGCATGGAACTTCGTGGGCCA 839
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 843 CTCGAACCTGACCGATGTAGTTGTTCCTGAAGGATGGGATGCATGGAATTTCGTGGGCCA 902
Query 840 CGAAAACCAGCTGATCTTTGCAGAACATGGATGCTTTGGAAGTGGAGCAACTACAGGAAG 899
||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 903 CGAAAACCAGCTGGTCTTTGCAGAACATGGATGCTTTGGAAGTGGAGCAAATATAGGAAG 962
Query 900 ACGTGTGAAGTGGGTTAAGAAGCTTAGTGGATCTGCCATTCAAAATTTGGCTGATCTCAG 959
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 963 ACGTGTGAAGTGGGTTAAGAAGCTTAGTGAATCTGCCATTCAAAATTTGGCTGATCTCAG 1022
Query 960 CTTTATTAATCGTGGTGGATGGGTTGAAGATTTACCCATCCCTGCTTGA 1008
||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1023 CTTTATTAATCGTGGTGGATGGGTTGAAGATTTGCCCATCCCTGCTTGA 1071
> AT5G18990.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:6340076-6341614 FORWARD LENGTH=993
Length=993
Score = 1088 bits (589), Expect = 0.0
Identities = 879/1016 (87%), Gaps = 31/1016 (3%)
Strand=Plus/Plus
Query 1 ATGGGAACTCATCGAATTTTCATAGGTCTTATCGCTCTTTGTTGTTTTTGTTTACCTCAT 60
|||||||||||||||||| || | ||||| ||||||||||||||||||| ||||||||
Sbjct 1 ATGGGAACTCATCGAATTATCCTTGGTCTCGCCGCTCTTTGTTGTTTTTGTCTACCTCAT 60
Query 61 CTCATTGAAGCTAAACCATTCGGAGTATACCAACAACAAGTGTTCGTGGATCAATCGGGC 120
||||||||||||||||||||| | ||||| |||| ||||||||||||
Sbjct 61 CTCATTGAAGCTAAACCATTC---G------------AAGTGATCGTCGATCAATCGGGC 105
Query 121 CATGGAAATTTCACGACAATACAAAAAGCTATTGATTCTGTTCCAATCAACAAT-CGTCA 179
||||||||||||||||| |||||||||||||||||||| || |||||||||||| | |||
Sbjct 106 CATGGAAATTTCACGACCATACAAAAAGCTATTGATTCGGTCCCAATCAACAATAC-TCA 164
Query 180 TTGGTTCTTCATCAACGTTAAAGCTGGCCTTTACAGAGAGAAAATAAAGATACCGTATGA 239
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | |
Sbjct 165 TTGGTTCTTCATCAACGTTAAAGCCGGCCTTTACAGAGAGAAAATAACGATACCGCAAAA 224
Query 240 AAAACCGTTCATAGTATTAGTAGGAGCTGGGAAGA-GGTTAACGAGAGTTGAATGGGACG 298
|||||| ||||||||| | || ||||||||||| | ||| ||||||||| ||||||||||
Sbjct 225 AAAACCTTTCATAGTAATCGTGGGAGCTGGGAA-ACGGTCAACGAGAGTAGAATGGGACG 283
Query 299 ACCATTACTCGGTTGCACAAAGCCCTACCTTTTCTACTCTAGCCGATAACACCGTCGTT- 357
||||| |||| |||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 284 ACCATGCCTCGCTTGCACAAAGCCCTACCTTTGCTACTCTAGCTGATAACACCGTCGTTA 343
Query 358 AAAAGCATCACTTTCGCCAATTCATACAACTTTCCTAGCAAAGGGAAAATGAACAAGAAC 417
||||| ||||||||||||||||| |||||||| |||||||| |||||||| |||||||||
Sbjct 344 AAAAG-ATCACTTTCGCCAATTCCTACAACTTCCCTAGCAATGGGAAAATAAACAAGAAC 402
Query 418 CCTAGAACTCCAGCCGTAGCCGCGTTGATAGGTGGCGATAAGTCAGCTTTCTACTCTGTA 477
|||||| ||| ||||| || || || || || || |||||||| ||||| ||||| |||
Sbjct 403 CCTAGAGTTCCGGCCGTGGCAGCATTTATCGGCGGTGATAAGTCGGCTTTTTACTCGGTA 462
Query 478 GGGTTTGCTGGAATTCAAGATACCTTGTGGGACTCGGATGGTAGGCACTACTTCCACCGG 537
|| |||||||||||||||||||||||||||||||||||||| | ||||||||||| |
Sbjct 463 GGATTTGCTGGAATTCAAGATACCTTGTGGGACTCGGATGGCCGACACTACTTCCATAGA 522
Query 538 TGTACCATACAAGGCGCGGTCGATTTCATCTTTGGTAGCGGCCAATCTATTTACCAGAGT 597
|| ||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 523 TGCACCATCCAAGGCGCGGTTGATTTCATCTTAGGGAGCGGCCAATCTATTTACCAGAGC 582
Query 598 TGTGTGATACAAGTGCTAGGTGGGCAGCTAGAACCGGGGCTAGCGGGTTACATAACGGCT 657
||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct 583 TGTGTGATACAAGTGCTAGGTGGGCAGCTAGGACCGGGGGTAACGGGTTACATAACGGCT 642
Query 658 CAAGGACGGACCAACCCGTACGATGCAAATGGATTCATCTTCATCAACTGCCTTGTAT-A 716
||||||||||||||| | |||| || ||||||||| | |||||||||||||| || | |
Sbjct 643 CAAGGACGGACCAACGCAAACGACGCGAATGGATTCGTATTCATCAACTGCCTCGT-TCA 701
Query 717 TGGAA-CGGGCATGGCCTT-CTTGGGCAG-GCCGTGGCGCGGTTACTCTCGAGTGATTTT 773
|||| ||| || ||| || ||||||||| ||| |||||| |||||||||||||| ||
Sbjct 702 TGGATTCGG-CAAGGC-TTACTTGGGCAGAGCC-TGGCGCCCATACTCTCGAGTGATATT 758
Query 774 TTACAACTCGAACCTGACCGATGTAGTTGTTCCTGAAGGATGG-GACGCATGGAACTTCG 832
|||||||||||||||||| ||||| |||| |||| ||||||| | | |||||||| |
Sbjct 759 TTACAACTCGAACCTGACGGATGTGGTTGATCCTCTAGGATGGTGG-GAATGGAACTACC 817
Query 833 TGGGCCACGAAAACCAGCTGATCTTTGCAGAACATGGATGCTTTGGAAGTGGAGCAACTA 892
||| ||||||| ||||||| || |||||||||||||||||| ||||||||| ||| ||
Sbjct 818 AGGGTTACGAAAAGCAGCTGACCTATGCAGAACATGGATGCTTCGGAAGTGGATCAAATA 877
Query 893 CAGGAAGACGTGTGAAGTGGGTTAAGAAGCTTAGTGGATCTGCCATTCAAAATTTGGCTG 952
|| |||||||| || |||||||||||||| |||| ||||||| | ||| |||||||||
Sbjct 878 CATCAAGACGTGCCAAATGGGTTAAGAAGCTGAGTGCATCTGCCGTCCAACATTTGGCTG 937
Query 953 ATCTCAGCTTTATTAATCGTGGTGGATGGGTTGAAGATTTACCCATCCCTGCTTGA 1008
|||||||||| ||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 938 ATCTCAGCTTCATTAATCGTGGTGGATGGGTTGAAGATTTACCCATCCGTGTTTGA 993
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49380166501
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5