BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg905490 Length=1008 Score E Sequences producing significant alignments: (Bits) Value AT3G24130.1 | Symbols: | Pectin lyase-like superfamily protein... 1618 0.0 AT5G18990.1 | Symbols: | Pectin lyase-like superfamily protein... 1088 0.0 > AT3G24130.1 | Symbols: | Pectin lyase-like superfamily protein | chr3:8711663-8713424 REVERSE LENGTH=1071 Length=1071 Score = 1618 bits (876), Expect = 0.0 Identities = 965/1009 (96%), Gaps = 2/1009 (0%) Strand=Plus/Plus Query 1 ATGGGAACTCATCGAATTTTCATAGGTCTTATCGCTCTTTGTTGTTTTTGTTTACCTCAT 60 ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| Sbjct 64 ATGGGAACTCATCGAATTTTCATAGGTCTCATCGCTCTTTGTTGTTTTTGTCTACCTCAC 123 Query 61 CTCATTGAAGCTAAACCATTCGGAGTATACCAACAACAAGTGTTCGTGGATCAATCGGGC 120 |||||||||||||| |||||||||||||||||||||||||| || || |||||||| ||| Sbjct 124 CTCATTGAAGCTAAGCCATTCGGAGTATACCAACAACAAGTATTTGTTGATCAATCCGGC 183 Query 121 CATGGAAATTTCACGACAATACAAAAAGCTATTGATTCTGTTCCAATCAACAATCGTCAT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 184 CATGGAAATTTCACGACAATACAAAAAGCTATTGATTCTGTTCCAATCAACAATCGTCAT 243 Query 181 TGGTTCTTCATCAACGTTAAAGCTGGCCTTTACAGAGAGAAAATAAAGATACCGTATGAA 240 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 244 TGGTTCTTCATCAACGTTAAAGCCGGTCTTTACAGAGAGAAAATAAAGATACCGTATGAA 303 Query 241 AAACCGTTCATAGTATTAGTAGGAGCTGGGAAGAGGTTAACGAGAGTTGAATGGGACGAC 300 ||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||| Sbjct 304 AAACCGTTCATAGTACTAGTAGGAGCTGGAAAAAGGTTAACGAGAGTTGAATGGGACGAC 363 Query 301 CATTACTCGGTTGCACAAAGCCCTACCTTTTCTACTCTAGCCGATAACACCGTCGTTAAA 360 |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 364 CATTACTCGGTTGCACAAAGCCCTACCTTTTCTACTCTTGCCGATAACACCGTTGTTAAA 423 Query 361 AGCATCACTTTCGCCAATTCATACAACTTTCC-TAGCAAAGGGAAAATGAACAAGAACCC 419 |||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||| Sbjct 424 AGCATCACTTTCGCCAATTCCTATAA-TTTCCCTAGCAAAGGGAAAATGAACAAGAACCC 482 Query 420 TAGAACTCCAGCCGTAGCCGCGTTGATAGGTGGCGATAAGTCAGCTTTCTACTCTGTAGG 479 ||||||||||||||| || ||||||||||| ||||||||||| ||||| ||||| ||||| Sbjct 483 TAGAACTCCAGCCGTGGCAGCGTTGATAGGCGGCGATAAGTCGGCTTTTTACTCGGTAGG 542 Query 480 GTTTGCTGGAATTCAAGATACCTTGTGGGACTCGGATGGTAGGCACTACTTCCACCGGTG 539 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 543 GTTTGCTGGAATTCAAGATACCTTGTGGGACTTTGATGGCCGGCACTACTTCCACCGGTG 602 Query 540 TACCATACAAGGCGCGGTCGATTTCATCTTTGGTAGCGGCCAATCTATTTACCAGAGTTG 599 ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || Sbjct 603 TACCATACAAGGCGCGGTCGATTTCATCTTTGGTACCGGTCAATCTATTTACCAGAGCTG 662 Query 600 TGTGATACAAGTGCTAGGTGGGCAGCTAGAACCGGGGCTAGCGGGTTACATAACGGCTCA 659 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 663 TGTGATACAAGTGCTAGGTGGGCAGCTAGAACCGGGGCTAGCCGGTTACATAACGGCTCA 722 Query 660 AGGACGGACCAACCCGTACGATGCAAATGGATTCATCTTCATCAACTGCCTTGTATATGG 719 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 723 AGGACGGACCAACCCGTACGATGCAAATGGATTCATCTTCATCAACTGCCTCGTATATGG 782 Query 720 AACGGGCATGGCCTTCTTGGGCAGGCCGTGGCGCGGTTACTCTCGAGTGATTTTTTACAA 779 ||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 783 AACAGGCATGGCCTTCTTGGGCAGGCCGTGGCGCGGTTATTCTCGAGTGATCTTTTACAA 842 Query 780 CTCGAACCTGACCGATGTAGTTGTTCCTGAAGGATGGGACGCATGGAACTTCGTGGGCCA 839 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 843 CTCGAACCTGACCGATGTAGTTGTTCCTGAAGGATGGGATGCATGGAATTTCGTGGGCCA 902 Query 840 CGAAAACCAGCTGATCTTTGCAGAACATGGATGCTTTGGAAGTGGAGCAACTACAGGAAG 899 ||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| Sbjct 903 CGAAAACCAGCTGGTCTTTGCAGAACATGGATGCTTTGGAAGTGGAGCAAATATAGGAAG 962 Query 900 ACGTGTGAAGTGGGTTAAGAAGCTTAGTGGATCTGCCATTCAAAATTTGGCTGATCTCAG 959 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 963 ACGTGTGAAGTGGGTTAAGAAGCTTAGTGAATCTGCCATTCAAAATTTGGCTGATCTCAG 1022 Query 960 CTTTATTAATCGTGGTGGATGGGTTGAAGATTTACCCATCCCTGCTTGA 1008 ||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1023 CTTTATTAATCGTGGTGGATGGGTTGAAGATTTGCCCATCCCTGCTTGA 1071 > AT5G18990.1 | Symbols: | Pectin lyase-like superfamily protein | chr5:6340076-6341614 FORWARD LENGTH=993 Length=993 Score = 1088 bits (589), Expect = 0.0 Identities = 879/1016 (87%), Gaps = 31/1016 (3%) Strand=Plus/Plus Query 1 ATGGGAACTCATCGAATTTTCATAGGTCTTATCGCTCTTTGTTGTTTTTGTTTACCTCAT 60 |||||||||||||||||| || | ||||| ||||||||||||||||||| |||||||| Sbjct 1 ATGGGAACTCATCGAATTATCCTTGGTCTCGCCGCTCTTTGTTGTTTTTGTCTACCTCAT 60 Query 61 CTCATTGAAGCTAAACCATTCGGAGTATACCAACAACAAGTGTTCGTGGATCAATCGGGC 120 ||||||||||||||||||||| | ||||| |||| |||||||||||| Sbjct 61 CTCATTGAAGCTAAACCATTC---G------------AAGTGATCGTCGATCAATCGGGC 105 Query 121 CATGGAAATTTCACGACAATACAAAAAGCTATTGATTCTGTTCCAATCAACAAT-CGTCA 179 ||||||||||||||||| |||||||||||||||||||| || |||||||||||| | ||| Sbjct 106 CATGGAAATTTCACGACCATACAAAAAGCTATTGATTCGGTCCCAATCAACAATAC-TCA 164 Query 180 TTGGTTCTTCATCAACGTTAAAGCTGGCCTTTACAGAGAGAAAATAAAGATACCGTATGA 239 |||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | | Sbjct 165 TTGGTTCTTCATCAACGTTAAAGCCGGCCTTTACAGAGAGAAAATAACGATACCGCAAAA 224 Query 240 AAAACCGTTCATAGTATTAGTAGGAGCTGGGAAGA-GGTTAACGAGAGTTGAATGGGACG 298 |||||| ||||||||| | || ||||||||||| | ||| ||||||||| |||||||||| Sbjct 225 AAAACCTTTCATAGTAATCGTGGGAGCTGGGAA-ACGGTCAACGAGAGTAGAATGGGACG 283 Query 299 ACCATTACTCGGTTGCACAAAGCCCTACCTTTTCTACTCTAGCCGATAACACCGTCGTT- 357 ||||| |||| |||||||||||||||||||| |||||||||| ||||||||||||||| Sbjct 284 ACCATGCCTCGCTTGCACAAAGCCCTACCTTTGCTACTCTAGCTGATAACACCGTCGTTA 343 Query 358 AAAAGCATCACTTTCGCCAATTCATACAACTTTCCTAGCAAAGGGAAAATGAACAAGAAC 417 ||||| ||||||||||||||||| |||||||| |||||||| |||||||| ||||||||| Sbjct 344 AAAAG-ATCACTTTCGCCAATTCCTACAACTTCCCTAGCAATGGGAAAATAAACAAGAAC 402 Query 418 CCTAGAACTCCAGCCGTAGCCGCGTTGATAGGTGGCGATAAGTCAGCTTTCTACTCTGTA 477 |||||| ||| ||||| || || || || || || |||||||| ||||| ||||| ||| Sbjct 403 CCTAGAGTTCCGGCCGTGGCAGCATTTATCGGCGGTGATAAGTCGGCTTTTTACTCGGTA 462 Query 478 GGGTTTGCTGGAATTCAAGATACCTTGTGGGACTCGGATGGTAGGCACTACTTCCACCGG 537 || |||||||||||||||||||||||||||||||||||||| | ||||||||||| | Sbjct 463 GGATTTGCTGGAATTCAAGATACCTTGTGGGACTCGGATGGCCGACACTACTTCCATAGA 522 Query 538 TGTACCATACAAGGCGCGGTCGATTTCATCTTTGGTAGCGGCCAATCTATTTACCAGAGT 597 || ||||| ||||||||||| ||||||||||| || ||||||||||||||||||||||| Sbjct 523 TGCACCATCCAAGGCGCGGTTGATTTCATCTTAGGGAGCGGCCAATCTATTTACCAGAGC 582 Query 598 TGTGTGATACAAGTGCTAGGTGGGCAGCTAGAACCGGGGCTAGCGGGTTACATAACGGCT 657 ||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| Sbjct 583 TGTGTGATACAAGTGCTAGGTGGGCAGCTAGGACCGGGGGTAACGGGTTACATAACGGCT 642 Query 658 CAAGGACGGACCAACCCGTACGATGCAAATGGATTCATCTTCATCAACTGCCTTGTAT-A 716 ||||||||||||||| | |||| || ||||||||| | |||||||||||||| || | | Sbjct 643 CAAGGACGGACCAACGCAAACGACGCGAATGGATTCGTATTCATCAACTGCCTCGT-TCA 701 Query 717 TGGAA-CGGGCATGGCCTT-CTTGGGCAG-GCCGTGGCGCGGTTACTCTCGAGTGATTTT 773 |||| ||| || ||| || ||||||||| ||| |||||| |||||||||||||| || Sbjct 702 TGGATTCGG-CAAGGC-TTACTTGGGCAGAGCC-TGGCGCCCATACTCTCGAGTGATATT 758 Query 774 TTACAACTCGAACCTGACCGATGTAGTTGTTCCTGAAGGATGG-GACGCATGGAACTTCG 832 |||||||||||||||||| ||||| |||| |||| ||||||| | | |||||||| | Sbjct 759 TTACAACTCGAACCTGACGGATGTGGTTGATCCTCTAGGATGGTGG-GAATGGAACTACC 817 Query 833 TGGGCCACGAAAACCAGCTGATCTTTGCAGAACATGGATGCTTTGGAAGTGGAGCAACTA 892 ||| ||||||| ||||||| || |||||||||||||||||| ||||||||| ||| || Sbjct 818 AGGGTTACGAAAAGCAGCTGACCTATGCAGAACATGGATGCTTCGGAAGTGGATCAAATA 877 Query 893 CAGGAAGACGTGTGAAGTGGGTTAAGAAGCTTAGTGGATCTGCCATTCAAAATTTGGCTG 952 || |||||||| || |||||||||||||| |||| ||||||| | ||| ||||||||| Sbjct 878 CATCAAGACGTGCCAAATGGGTTAAGAAGCTGAGTGCATCTGCCGTCCAACATTTGGCTG 937 Query 953 ATCTCAGCTTTATTAATCGTGGTGGATGGGTTGAAGATTTACCCATCCCTGCTTGA 1008 |||||||||| ||||||||||||||||||||||||||||||||||||| || |||| Sbjct 938 ATCTCAGCTTCATTAATCGTGGTGGATGGGTTGAAGATTTACCCATCCGTGTTTGA 993 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49380166501 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5