BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg905498 Length=1476 Score E Sequences producing significant alignments: (Bits) Value AT1G70770.1 | Symbols: | Protein of unknown function DUF2359, ... 499 3e-140 > AT1G70770.1 | Symbols: | Protein of unknown function DUF2359, transmembrane | chr1:26688230-26691277 REVERSE LENGTH=2317 Length=2317 Score = 499 bits (270), Expect = 3e-140 Identities = 572/712 (80%), Gaps = 44/712 (6%) Strand=Plus/Plus Query 687 AGTTTGGACGATGGCTCAGGCCTCCCAAGTTGATTTATCTGTTGGCTTGTATTCATGGGC 746 |||||||| |||||||||||||||||||| |||| || |||| ||||||||||||||||| Sbjct 1016 AGTTTGGATGATGGCTCAGGCCTCCCAAGGTGATATAGCTGTAGGCTTGTATTCATGGGC 1075 Query 747 -CAATAACTTGTTACCTCTAGTTGGTAATATCAAGTGCTGCAGCCCTCAGTC-AGTGGAT 804 | | |||||||||||| | || ||| | || ||| ||| | ||||||||| || |||| Sbjct 1076 TC-ACAACTTGTTACCTGTTGTCGGT-A-AT-AAGAACTGTAACCCTCAGTCAAG-GGAT 1130 Query 805 CTCATCCTGCAATCT-GTTGAGAACATATTGTCTAATCCAGAGGCTGAG-ACCATACTTG 862 ||||||||||| | | |||||||| || ||| | |||||| ||||| | |||||||||| Sbjct 1131 CTCATCCTGCAGT-TGGTTGAGAAAATTTTGACGAATCCAAAGGCT-CGTACCATACTTG 1188 Query 863 TAAATGGAGTTGTTAGGGATGGAGATTG-GCTT-ATACCACCTACTTCATTTGAGATCTT 920 ||||||||| ||||||| | ||||| | | || || |||||| |||||||||||||||| Sbjct 1189 TAAATGGAGCTGTTAGGAAGGGAGA--GCGTTTGATTCCACCTCCTTCATTTGAGATCTT 1246 Query 921 GGTGCGGCTTACATTCCCT-CTATCATCAGAAAGAGTAAAGACCACTGAGAGGTTTGAGG 979 | ||||||||||||||||| | |||||| | |||||||||| | || ||||||||||||| Sbjct 1247 GTTGCGGCTTACATTCCCTGC-ATCATCTGCAAGAGTAAAGGCTACAGAGAGGTTTGAGG 1305 Query 980 CCATTTATCCGTTGTTG-AAGAAAGTAGCTC-T-C----GCACCAGGTTGCAACGCAATG 1032 | || ||||| ||| || ||| |||| |||| | | |||||||| |||| || ||| Sbjct 1306 CAATATATCCCTTGCTGAAAG-AAGTGGCTCTTGCTGGTGCACCAGGAAGCAAGGCGATG 1364 Query 1033 GAA-GAG--A-TCTTC-GA-ATTGTC-TTTGAAAT--TATTAGTTGTAGAAGGAAATCCT 1083 || || | | | || ||| | |||| | ||||| || ||||||||||||| Sbjct 1365 AAACAAGTCACACAACAGATATTCACTTTTGCTCTGAAATTAGCTGGAGAAGGAAATCCT 1424 Query 1084 GTTTTAGCCAAGGAAGCTACAGAAATCGCTATCTGG-CTTTTGACCGAAAACGCTGATTG 1142 |||||||||||||||||||||| ||| ||||||||| || | |||| ||||| |||||| Sbjct 1425 GTTTTAGCCAAGGAAGCTACAGCAATTGCTATCTGGTCTGT-GACCCAAAACTTTGATTG 1483 Query 1143 CTTTGAGCAATGGGAGATTCTCTATAAGAAGAATCAAGAAGCTAGTGTTGCTCTTCTTAA 1202 || |||| ||||| | |||||| ||| |||||| ||||||||||||||| ||||||| Sbjct 1484 CTGCAAGCACTGGGACAATCTCTACAAGGAGAATCTGGAAGCTAGTGTTGCTGTTCTTAA 1543 Query 1203 AAAGCTTGTAGA-GAAATGGAAGGATCGTTCTCTCAAACTAAT-ATCAACACCGAGTGAT 1260 ||||||||| || ||| ||||| || | ||| |||||||| | |||| |||||| |||| Sbjct 1544 AAAGCTTGTTGAAGAA-TGGAAAGAGCATTCGGTCAAACTA-TCATCATCACCGAATGAT 1601 Query 1261 ACTCTCACCCTCAATCGAGCCATGACGAGCTTCAGGCTAGAGAGCAAAAATGCCATCAGC 1320 ||||||| ||||| ||| | |||| |||||||||||| ||| | | | | ||||| | Sbjct 1602 GCTCTCACTCTCAACCGAACTATGAAAAGCTTCAGGCTAAAGAACGAGGAGGTCATCA-C 1660 Query 1321 -GAAGGAGCG-GCCAATCCTTCTCTTTACAAGGAAGCTGACAAGTCTTGCAA 1370 || |||| | |||||| ||||||||||||| |||||||||||||||||||| Sbjct 1661 TGAGGGAG-GAGCCAATGCTTCTCTTTACAAAGAAGCTGACAAGTCTTGCAA 1711 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72790790250 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5