BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905498
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
AT1G70770.1 | Symbols: | Protein of unknown function DUF2359, ... 499 3e-140
> AT1G70770.1 | Symbols: | Protein of unknown function DUF2359,
transmembrane | chr1:26688230-26691277 REVERSE LENGTH=2317
Length=2317
Score = 499 bits (270), Expect = 3e-140
Identities = 572/712 (80%), Gaps = 44/712 (6%)
Strand=Plus/Plus
Query 687 AGTTTGGACGATGGCTCAGGCCTCCCAAGTTGATTTATCTGTTGGCTTGTATTCATGGGC 746
|||||||| |||||||||||||||||||| |||| || |||| |||||||||||||||||
Sbjct 1016 AGTTTGGATGATGGCTCAGGCCTCCCAAGGTGATATAGCTGTAGGCTTGTATTCATGGGC 1075
Query 747 -CAATAACTTGTTACCTCTAGTTGGTAATATCAAGTGCTGCAGCCCTCAGTC-AGTGGAT 804
| | |||||||||||| | || ||| | || ||| ||| | ||||||||| || ||||
Sbjct 1076 TC-ACAACTTGTTACCTGTTGTCGGT-A-AT-AAGAACTGTAACCCTCAGTCAAG-GGAT 1130
Query 805 CTCATCCTGCAATCT-GTTGAGAACATATTGTCTAATCCAGAGGCTGAG-ACCATACTTG 862
||||||||||| | | |||||||| || ||| | |||||| ||||| | ||||||||||
Sbjct 1131 CTCATCCTGCAGT-TGGTTGAGAAAATTTTGACGAATCCAAAGGCT-CGTACCATACTTG 1188
Query 863 TAAATGGAGTTGTTAGGGATGGAGATTG-GCTT-ATACCACCTACTTCATTTGAGATCTT 920
||||||||| ||||||| | ||||| | | || || |||||| ||||||||||||||||
Sbjct 1189 TAAATGGAGCTGTTAGGAAGGGAGA--GCGTTTGATTCCACCTCCTTCATTTGAGATCTT 1246
Query 921 GGTGCGGCTTACATTCCCT-CTATCATCAGAAAGAGTAAAGACCACTGAGAGGTTTGAGG 979
| ||||||||||||||||| | |||||| | |||||||||| | || |||||||||||||
Sbjct 1247 GTTGCGGCTTACATTCCCTGC-ATCATCTGCAAGAGTAAAGGCTACAGAGAGGTTTGAGG 1305
Query 980 CCATTTATCCGTTGTTG-AAGAAAGTAGCTC-T-C----GCACCAGGTTGCAACGCAATG 1032
| || ||||| ||| || ||| |||| |||| | | |||||||| |||| || |||
Sbjct 1306 CAATATATCCCTTGCTGAAAG-AAGTGGCTCTTGCTGGTGCACCAGGAAGCAAGGCGATG 1364
Query 1033 GAA-GAG--A-TCTTC-GA-ATTGTC-TTTGAAAT--TATTAGTTGTAGAAGGAAATCCT 1083
|| || | | | || ||| | |||| | ||||| || |||||||||||||
Sbjct 1365 AAACAAGTCACACAACAGATATTCACTTTTGCTCTGAAATTAGCTGGAGAAGGAAATCCT 1424
Query 1084 GTTTTAGCCAAGGAAGCTACAGAAATCGCTATCTGG-CTTTTGACCGAAAACGCTGATTG 1142
|||||||||||||||||||||| ||| ||||||||| || | |||| ||||| ||||||
Sbjct 1425 GTTTTAGCCAAGGAAGCTACAGCAATTGCTATCTGGTCTGT-GACCCAAAACTTTGATTG 1483
Query 1143 CTTTGAGCAATGGGAGATTCTCTATAAGAAGAATCAAGAAGCTAGTGTTGCTCTTCTTAA 1202
|| |||| ||||| | |||||| ||| |||||| ||||||||||||||| |||||||
Sbjct 1484 CTGCAAGCACTGGGACAATCTCTACAAGGAGAATCTGGAAGCTAGTGTTGCTGTTCTTAA 1543
Query 1203 AAAGCTTGTAGA-GAAATGGAAGGATCGTTCTCTCAAACTAAT-ATCAACACCGAGTGAT 1260
||||||||| || ||| ||||| || | ||| |||||||| | |||| |||||| ||||
Sbjct 1544 AAAGCTTGTTGAAGAA-TGGAAAGAGCATTCGGTCAAACTA-TCATCATCACCGAATGAT 1601
Query 1261 ACTCTCACCCTCAATCGAGCCATGACGAGCTTCAGGCTAGAGAGCAAAAATGCCATCAGC 1320
||||||| ||||| ||| | |||| |||||||||||| ||| | | | | ||||| |
Sbjct 1602 GCTCTCACTCTCAACCGAACTATGAAAAGCTTCAGGCTAAAGAACGAGGAGGTCATCA-C 1660
Query 1321 -GAAGGAGCG-GCCAATCCTTCTCTTTACAAGGAAGCTGACAAGTCTTGCAA 1370
|| |||| | |||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1661 TGAGGGAG-GAGCCAATGCTTCTCTTTACAAAGAAGCTGACAAGTCTTGCAA 1711
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790790250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5