BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905515

Length=405
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G31560.1 | Symbols: HCF153 | high chlorophyll fluorescence 1...   171    6e-42


> AT4G31560.1 | Symbols: HCF153 | high chlorophyll fluorescence 
153 | chr4:15295201-15296241 FORWARD LENGTH=645
Length=645

 Score =  171 bits (92),  Expect = 6e-42
 Identities = 113/123 (92%), Gaps = 1/123 (1%)
 Strand=Plus/Minus

Query  46   TCCTCAAGTAAATCTTCGTCGAGTTTATCAGCGATTTTGATTGAAGTGAAGACAGTGGTG  105
            |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct  302  TCCTCAAGGAAATCTTCGTCGAGTTTGTCAGCGATTTTGATTGAAGTGAAGACAGTGGCG  243

Query  106  GCGACAAGAGTAGCAGGAATTTGCGAACGTGAGCAAGTAGCTGCTCGTACTAAGCCTTAC  165
            |||| |||||||||||||| | ||||||| |||||||||||||||||||||| ||| | |
Sbjct  242  GCGATAAGAGTAGCAGGAA-TGGCGAACGCGAGCAAGTAGCTGCTCGTACTAGGCCCTGC  184

Query  166  TCG  168
            |||
Sbjct  183  TCG  181



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19152012369


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5