BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905516

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G50530.2 | Symbols: CRK | CDPK-related kinase | chr3:1875354...   339    1e-92


> AT3G50530.2 | Symbols: CRK | CDPK-related kinase | chr3:18753541-18756773 
FORWARD LENGTH=2477
Length=2477

 Score =  339 bits (183),  Expect = 1e-92
 Identities = 193/198 (97%), Gaps = 0/198 (0%)
 Strand=Plus/Plus

Query  127   GCTTATGAGCTTTTCGAAAAGGAAGGAAACCGACCCATCATGATCGATGAACTCGCTTCG  186
             |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct  1994  GCTTATGAGCTTTTCGAAAAGGAAGGGAACCGACCAATCATGATCGATGAACTCGCTTCG  2053

Query  187   GAACTTGGTCTTGGTCCTTCTGTACCGGTTCACGCAGTGCTTCACGATTGGCTTAGGCAT  246
             |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  2054  GAACTTGGTCTTGGCCCTTCTGTACCGGTTCACGCAGTGCTTCACGATTGGCTTAGACAT  2113

Query  247   ACCGATGGAAAGCTTAGCTTTCTCGGATTTGTGAAATTGCTACATGGTGTGTCTAGCCGC  306
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  2114  ACCGATGGGAAGCTTAGCTTTCTCGGATTTGTGAAATTGCTACATGGTGTGTCTAGCCGC  2173

Query  307   ACGATCAAAGCTCATTAG  324
             ||||||||||||||||||
Sbjct  2174  ACGATCAAAGCTCATTAG  2191



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5