BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905518
Length=258
Score E
Sequences producing significant alignments: (Bits) Value
AT4G31560.1 | Symbols: HCF153 | high chlorophyll fluorescence 1... 353 4e-97
> AT4G31560.1 | Symbols: HCF153 | high chlorophyll fluorescence
153 | chr4:15295201-15296241 FORWARD LENGTH=645
Length=645
Score = 353 bits (191), Expect = 4e-97
Identities = 236/258 (91%), Gaps = 1/258 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAGACTTTTCGTCTCTTTCCCTATGCAACCCACACAAATAAGCTTCTCTGCGTCT 60
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 19 ATGGCGAGACTTTTCGTCTCTATCCCTATGCAACCCACACAAATAAGCTTCCCTGCGTCT 78
Query 61 TCTTCCCAGCCACTATTCTCTCCGCTGGTGAAAAATTTCCCCGATGGTGTAGCCGGGGGA 120
||||| ||||||||||| ||||||| || ||| |||||| ||||||||| ||| ||||||
Sbjct 79 TCTTCTCAGCCACTATTATCTCCGCCGGCGAACAATTTCACCGATGGTGGAGCTGGGGGA 138
Query 121 TTATGTCTTAGACGGAGAATCAGAGACTGTTCTGTGGTGACCCGAGTAAAGCTTAGTACG 180
|||||||||| |||||||||||||||| |||| |||||||| |||| | || |||||||
Sbjct 139 TTATGTCTTACACGGAGAATCAGAGACAGTTCCGTGGTGACGCGAGCAGGGCCTAGTACG 198
Query 181 AGCAGCTACTTGCTCACGTTCGCAAATTCCTGCTACTCTTGTCGCCGCCACTGTCTTCAC 240
||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 199 AGCAGCTACTTGCTCGCGTTCGC-CATTCCTGCTACTCTTATCGCCGCCACTGTCTTCAC 257
Query 241 TTCAATCAAAATCGCTGA 258
||||||||||||||||||
Sbjct 258 TTCAATCAAAATCGCTGA 275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11762653266
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5