BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905519

Length=345
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G50530.2 | Symbols: CRK | CDPK-related kinase | chr3:1875354...   254    5e-67


> AT3G50530.2 | Symbols: CRK | CDPK-related kinase | chr3:18753541-18756773 
FORWARD LENGTH=2477
Length=2477

 Score =  254 bits (137),  Expect = 5e-67
 Identities = 210/241 (87%), Gaps = 22/241 (9%)
 Strand=Plus/Plus

Query  127   GCTTATGAGCTTTTCGAAAAGGAAGGAAACCGACCCATCATGATCGATGAACTCGCTTCG  186
             |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct  1994  GCTTATGAGCTTTTCGAAAAGGAAGGGAACCGACCAATCATGATCGATGAACTCGCTTCG  2053

Query  187   GAACTTGGTCTTGGTCCTTCTGTACCGGTTCACGCAGTGCTTCACGATTGGCTTAGGCAT  246
             |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  2054  GAACTTGGTCTTGGCCCTTCTGTACCGGTTCACGCAGTGCTTCACGATTGGCTTAGACAT  2113

Query  247   ACCGATGAAAAGCTTAGCTTTCTCGGATTT---------CTA---G------C---C-GC  284
             |||||||  |||||||||||||||||||||         |||   |      |   | ||
Sbjct  2114  ACCGATGGGAAGCTTAGCTTTCTCGGATTTGTGAAATTGCTACATGGTGTGTCTAGCCGC  2173

Query  285   ACGATCAAAGCTCATTAGAAGGGTTTTGAAACATGGAATGATATGTATGAGATTTGTCTG  344
             |||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||
Sbjct  2174  ACGATCAAAGCTCATTAGAAGGGTTTTGAAACTTTGAATGATATGTATGAAATTTGTCTG  2233

Query  345   A  345
             |
Sbjct  2234  A  2234



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16135947429


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5