BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905530
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23955.2 | Symbols: | F-box family protein | chr3:8655023-8... 627 5e-179
AT2G05300.1 | Symbols: | pseudogene of the F-box protein famil... 577 5e-164
> AT3G23955.2 | Symbols: | F-box family protein | chr3:8655023-8657439
REVERSE LENGTH=1618
Length=1618
Score = 627 bits (339), Expect = 5e-179
Identities = 538/628 (86%), Gaps = 38/628 (6%)
Strand=Plus/Plus
Query 25 CGGGTGCACTCTCGGTCACTGAAGAGATTCTGTTTTATACGAAGTTTTTCTCTCCGTCCA 84
|||||||||||||||||||||||||| | ||||||| || | || | ||||
Sbjct 761 CGGGTGCACTCTCGGTCACTGAAGAG---C---TTTATACTAACTGATT-T-GGAGTCCG 812
Query 85 ATGCCAAGCCTAGATATTTCTCTCCGTTTTCGTTTGTGGG-CTTT--TG-A-C---GA-A 135
|||||||| | ||||||||||||||||||| | ||||| |||| | | | | |
Sbjct 813 ATGCCAAG-TTCGATATTTCTCTCCGTTTTCATAAGTGGGTCTTTAACGAAGCAAAAACA 871
Query 136 AG-A--A---ACATGTTTCTCGCTTGGATTTCGAGGGTTAGAGATATGACGATATGTGCA 189
|| | | |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 872 AGTACCATCCACATGTTTCTCGCTTGGATTTCGAGGGTCAGAGATATGACGATATGTGCA 931
Query 190 -AACACTTTCAAGCTCATGCAGCTTTACTCAGTATTTAAACCGCTACCTCAATTTGGTTA 248
|| |||||||||||||| || | |||||||| || | | |||||||||||| |||||
Sbjct 932 CAA-ACTTTCAAGCTCATCCATCATTACTCAGAATCTGTTCAGCTACCTCAATTCGGTTA 990
Query 249 CATGTCCAGTCTATACGTTACTCTCACTGCAT-ATGATTTGAAATGGTTTCCAATCTTTC 307
|||||||||||||||| ||||||||| ||||| | |||||||||||||||||||||||||
Sbjct 991 CATGTCCAGTCTATACATTACTCTCAATGCATCA-GATTTGAAATGGTTTCCAATCTTTC 1049
Query 308 -T--GAGTAGCCCGAATCTGAAATCCCTCATCTT-G-GAACGGATTGG--TGGTTCTTTC 360
| ||||| |||||||||||||||||||||||| | | | ||| || |||||||| |
Sbjct 1050 TTAGGAGTATCCCGAATCTGAAATCCCTCATCTTAGTG-ATGGAACGGACTGGTTCTTCC 1108
Query 361 CATCAACTGTCTCCCAAGGCGATGGAACGAGTTAGTATTTCATCTGTGACTGAGTGTTTG 420
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1109 CATCAACTGTCTCCCAAGGCGATCAAACGAGTTAGTATTTCATCTGTGCCTGAGTGTTTG 1168
Query 421 CTATCGTCCCTCGAGTTTGTTGATTTCAAATCCCCAATTTG-GGAACTTGCTCCAGAAAT 479
||||||||||||||||||||||| |||||| |||||||||| ||| ||||||||||| ||
Sbjct 1169 CTATCGTCCCTCGAGTTTGTTGAATTCAAAGCCCCAATTTGTGGA-CTTGCTCCAGAGAT 1227
Query 480 GAAGCTCGTATGGTACTTCCTAGAGAATTCTCCCACCCTCAAGAAACTCACTCTACATTT 539
|| ||| |||||||||||||||||||| |||||||| ||||||||||||||||||| |||
Sbjct 1228 GATGCTAGTATGGTACTTCCTAGAGAACTCTCCCACACTCAAGAAACTCACTCTACGTTT 1287
Query 540 GAAGTCTCATTCAATAACAGATGACTTCATCAAAAAACTCCTCAAAATCCCAAGATGCTC 599
|||||||||||||| || ||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1288 GAAGTCTCATTCAACAAAAGATGACTTTGTCAAGAAACTCCTCAAAATCCCAAGATGCTC 1347
Query 600 TACCGAATGTGAAGTTGTCTTTCTTTGA 627
||| ||||||||||| |||||||||||
Sbjct 1348 TACAGAATGTGAAGTCATCTTTCTTTGA 1375
> AT2G05300.1 | Symbols: | pseudogene of the F-box protein family
| chr2:1931242-1933010 FORWARD LENGTH=1610
Length=1610
Score = 577 bits (312), Expect = 5e-164
Identities = 482/558 (86%), Gaps = 36/558 (6%)
Strand=Plus/Plus
Query 80 GTCCAATGCCAAGCCTAGATATTTCTCTCCGTTTTCGTTTGTGGGC-TTTT---G-A-C- 132
||||||||||||| | |||||||||||| |||||||||||| ||| |||| | | |
Sbjct 759 GTCCAATGCCAAG-TTTGATATTTCTCTCTGTTTTCGTTTGT-GGCGTTTTGACGAAGCT 816
Query 133 --GA-AAG----A--AACATGTTTCTCGCTTGGATTTCGAGGGTTAGAGATATGACGATA 183
|| ||| | |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 817 AAGAGAAGTATTATCAACATGTTTCTCGCTTGGATTTCGAGGGTTAGAGATATGAAGATA 876
Query 184 TGTGCAAACACTTTCAAGCTCATGCAGCTTTACTCAGTAT-TTAAACCGCTACCTCAATT 242
|||||| |||||||||||||||| || | ||||||| || || | |||||||||| |||
Sbjct 877 TGTGCACACACTTTCAAGCTCATCCATCGATACTCAGAATCTTCA-CCGCTACCTCGATT 935
Query 243 TGGTTACATGTCCAGTCTATACGTTACTCTCACTGCAT-ATGATTTGAAATGGTTTCCAA 301
||||||||||||||||||||| |||||||||| ||||| | || ||| ||||||||||||
Sbjct 936 TGGTTACATGTCCAGTCTATATGTTACTCTCAATGCATCA-GAATTGGAATGGTTTCCAA 994
Query 302 TCTTTCT--G-AGTAGCCCGAATCTGAAATCCCTCATCTTGGAACGGATTGGTGGTTCTT 358
||||||| | |||||||| ||||||||||| ||||||||||| |||| | ||||||||
Sbjct 995 TCTTTCTTAGGAGTAGCCCAAATCTGAAATCTCTCATCTTGGAGCGGA--G-TGGTTCTT 1051
Query 359 -TCCATCAACTGTCTCCCAAGGCGATGGAACGAGTTAGTATTTCATCTGTGAC-TGAGTG 416
|| ||||||| |||| |||||||||||||||||||||||| |||||||| || ||||||
Sbjct 1052 CTC-ATCAACTCTCTCGCAAGGCGATGGAACGAGTTAGTATGTCATCTGT-ACCTGAGTG 1109
Query 417 TTTGCTATCGTCCCTCGAGTTTGTTGATTTCAAATCCCCAATTTG-GGAACTTGCTCCAG 475
||||||| | ||||| ||||||||||| |||||| | |||||||| ||| |||| |||||
Sbjct 1110 TTTGCTAACATCCCTAGAGTTTGTTGAATTCAAAGCACCAATTTGCGGA-CTTGGTCCAG 1168
Query 476 AAATGAAGCTCGTATGGTACTTCCTAGAGAATTCTCCCACCCTCAAGAAACTCACTCTAC 535
| |||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1169 AGATGATGCTAGTATGGTACTTCCTAAAGAATTCTCCCACCCTCAAGAAACTCACTCTAC 1228
Query 536 ATTTGAAGTCTCATTCAAT-AACAGATGACTTCATCAAAAAACTCCTCAAAATCCCAAGA 594
||||||||||||||||| || ||||||||| |||| ||||||||| ||||||| |||
Sbjct 1229 CTTTGAAGTCTCATTCAACCAA-AGATGACTTTTTCAAGAAACTCCTCGAAATCCCGAGA 1287
Query 595 TGCTCTACCGAATGTGAA 612
||||||||||||||||||
Sbjct 1288 TGCTCTACCGAATGTGAA 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30240956494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5