BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg905530 Length=627 Score E Sequences producing significant alignments: (Bits) Value AT3G23955.2 | Symbols: | F-box family protein | chr3:8655023-8... 627 5e-179 AT2G05300.1 | Symbols: | pseudogene of the F-box protein famil... 577 5e-164 > AT3G23955.2 | Symbols: | F-box family protein | chr3:8655023-8657439 REVERSE LENGTH=1618 Length=1618 Score = 627 bits (339), Expect = 5e-179 Identities = 538/628 (86%), Gaps = 38/628 (6%) Strand=Plus/Plus Query 25 CGGGTGCACTCTCGGTCACTGAAGAGATTCTGTTTTATACGAAGTTTTTCTCTCCGTCCA 84 |||||||||||||||||||||||||| | ||||||| || | || | |||| Sbjct 761 CGGGTGCACTCTCGGTCACTGAAGAG---C---TTTATACTAACTGATT-T-GGAGTCCG 812 Query 85 ATGCCAAGCCTAGATATTTCTCTCCGTTTTCGTTTGTGGG-CTTT--TG-A-C---GA-A 135 |||||||| | ||||||||||||||||||| | ||||| |||| | | | | | Sbjct 813 ATGCCAAG-TTCGATATTTCTCTCCGTTTTCATAAGTGGGTCTTTAACGAAGCAAAAACA 871 Query 136 AG-A--A---ACATGTTTCTCGCTTGGATTTCGAGGGTTAGAGATATGACGATATGTGCA 189 || | | |||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 872 AGTACCATCCACATGTTTCTCGCTTGGATTTCGAGGGTCAGAGATATGACGATATGTGCA 931 Query 190 -AACACTTTCAAGCTCATGCAGCTTTACTCAGTATTTAAACCGCTACCTCAATTTGGTTA 248 || |||||||||||||| || | |||||||| || | | |||||||||||| ||||| Sbjct 932 CAA-ACTTTCAAGCTCATCCATCATTACTCAGAATCTGTTCAGCTACCTCAATTCGGTTA 990 Query 249 CATGTCCAGTCTATACGTTACTCTCACTGCAT-ATGATTTGAAATGGTTTCCAATCTTTC 307 |||||||||||||||| ||||||||| ||||| | ||||||||||||||||||||||||| Sbjct 991 CATGTCCAGTCTATACATTACTCTCAATGCATCA-GATTTGAAATGGTTTCCAATCTTTC 1049 Query 308 -T--GAGTAGCCCGAATCTGAAATCCCTCATCTT-G-GAACGGATTGG--TGGTTCTTTC 360 | ||||| |||||||||||||||||||||||| | | | ||| || |||||||| | Sbjct 1050 TTAGGAGTATCCCGAATCTGAAATCCCTCATCTTAGTG-ATGGAACGGACTGGTTCTTCC 1108 Query 361 CATCAACTGTCTCCCAAGGCGATGGAACGAGTTAGTATTTCATCTGTGACTGAGTGTTTG 420 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1109 CATCAACTGTCTCCCAAGGCGATCAAACGAGTTAGTATTTCATCTGTGCCTGAGTGTTTG 1168 Query 421 CTATCGTCCCTCGAGTTTGTTGATTTCAAATCCCCAATTTG-GGAACTTGCTCCAGAAAT 479 ||||||||||||||||||||||| |||||| |||||||||| ||| ||||||||||| || Sbjct 1169 CTATCGTCCCTCGAGTTTGTTGAATTCAAAGCCCCAATTTGTGGA-CTTGCTCCAGAGAT 1227 Query 480 GAAGCTCGTATGGTACTTCCTAGAGAATTCTCCCACCCTCAAGAAACTCACTCTACATTT 539 || ||| |||||||||||||||||||| |||||||| ||||||||||||||||||| ||| Sbjct 1228 GATGCTAGTATGGTACTTCCTAGAGAACTCTCCCACACTCAAGAAACTCACTCTACGTTT 1287 Query 540 GAAGTCTCATTCAATAACAGATGACTTCATCAAAAAACTCCTCAAAATCCCAAGATGCTC 599 |||||||||||||| || ||||||||| |||| |||||||||||||||||||||||||| Sbjct 1288 GAAGTCTCATTCAACAAAAGATGACTTTGTCAAGAAACTCCTCAAAATCCCAAGATGCTC 1347 Query 600 TACCGAATGTGAAGTTGTCTTTCTTTGA 627 ||| ||||||||||| ||||||||||| Sbjct 1348 TACAGAATGTGAAGTCATCTTTCTTTGA 1375 > AT2G05300.1 | Symbols: | pseudogene of the F-box protein family | chr2:1931242-1933010 FORWARD LENGTH=1610 Length=1610 Score = 577 bits (312), Expect = 5e-164 Identities = 482/558 (86%), Gaps = 36/558 (6%) Strand=Plus/Plus Query 80 GTCCAATGCCAAGCCTAGATATTTCTCTCCGTTTTCGTTTGTGGGC-TTTT---G-A-C- 132 ||||||||||||| | |||||||||||| |||||||||||| ||| |||| | | | Sbjct 759 GTCCAATGCCAAG-TTTGATATTTCTCTCTGTTTTCGTTTGT-GGCGTTTTGACGAAGCT 816 Query 133 --GA-AAG----A--AACATGTTTCTCGCTTGGATTTCGAGGGTTAGAGATATGACGATA 183 || ||| | |||||||||||||||||||||||||||||||||||||||| |||| Sbjct 817 AAGAGAAGTATTATCAACATGTTTCTCGCTTGGATTTCGAGGGTTAGAGATATGAAGATA 876 Query 184 TGTGCAAACACTTTCAAGCTCATGCAGCTTTACTCAGTAT-TTAAACCGCTACCTCAATT 242 |||||| |||||||||||||||| || | ||||||| || || | |||||||||| ||| Sbjct 877 TGTGCACACACTTTCAAGCTCATCCATCGATACTCAGAATCTTCA-CCGCTACCTCGATT 935 Query 243 TGGTTACATGTCCAGTCTATACGTTACTCTCACTGCAT-ATGATTTGAAATGGTTTCCAA 301 ||||||||||||||||||||| |||||||||| ||||| | || ||| |||||||||||| Sbjct 936 TGGTTACATGTCCAGTCTATATGTTACTCTCAATGCATCA-GAATTGGAATGGTTTCCAA 994 Query 302 TCTTTCT--G-AGTAGCCCGAATCTGAAATCCCTCATCTTGGAACGGATTGGTGGTTCTT 358 ||||||| | |||||||| ||||||||||| ||||||||||| |||| | |||||||| Sbjct 995 TCTTTCTTAGGAGTAGCCCAAATCTGAAATCTCTCATCTTGGAGCGGA--G-TGGTTCTT 1051 Query 359 -TCCATCAACTGTCTCCCAAGGCGATGGAACGAGTTAGTATTTCATCTGTGAC-TGAGTG 416 || ||||||| |||| |||||||||||||||||||||||| |||||||| || |||||| Sbjct 1052 CTC-ATCAACTCTCTCGCAAGGCGATGGAACGAGTTAGTATGTCATCTGT-ACCTGAGTG 1109 Query 417 TTTGCTATCGTCCCTCGAGTTTGTTGATTTCAAATCCCCAATTTG-GGAACTTGCTCCAG 475 ||||||| | ||||| ||||||||||| |||||| | |||||||| ||| |||| ||||| Sbjct 1110 TTTGCTAACATCCCTAGAGTTTGTTGAATTCAAAGCACCAATTTGCGGA-CTTGGTCCAG 1168 Query 476 AAATGAAGCTCGTATGGTACTTCCTAGAGAATTCTCCCACCCTCAAGAAACTCACTCTAC 535 | |||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1169 AGATGATGCTAGTATGGTACTTCCTAAAGAATTCTCCCACCCTCAAGAAACTCACTCTAC 1228 Query 536 ATTTGAAGTCTCATTCAAT-AACAGATGACTTCATCAAAAAACTCCTCAAAATCCCAAGA 594 ||||||||||||||||| || ||||||||| |||| ||||||||| ||||||| ||| Sbjct 1229 CTTTGAAGTCTCATTCAACCAA-AGATGACTTTTTCAAGAAACTCCTCGAAATCCCGAGA 1287 Query 595 TGCTCTACCGAATGTGAA 612 |||||||||||||||||| Sbjct 1288 TGCTCTACCGAATGTGAA 1305 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30240956494 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5