BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905531
Length=1227
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23950.1 | Symbols: | F-box family protein | chr3:8652908-8... 1465 0.0
AT3G23970.1 | Symbols: | F-box family protein | chr3:8660447-8... 1304 0.0
> AT3G23950.1 | Symbols: | F-box family protein | chr3:8652908-8654164
REVERSE LENGTH=1257
Length=1257
Score = 1465 bits (793), Expect = 0.0
Identities = 1099/1242 (88%), Gaps = 39/1242 (3%)
Strand=Plus/Plus
Query 7 TTTGAAGTCTTGGTGCGACTTCCACTAAAAAGCCTCGCAAGATTCAGATCAGTGTGCAGA 66
|||||||| ||||||||||||||| | || ||||||||||||||||||||| |||||| |
Sbjct 25 TTTGAAGTTTTGGTGCGACTTCCATTGAAGAGCCTCGCAAGATTCAGATCAATGTGCAAA 84
Query 67 GAATGGAAACTTCTGATCGACTCTGAATTCTTCCGAGACTACTTCATCTCGCTCAACTCT 126
||||||||||| | |||||||| |||||||||||||| | |||||| || | |||||||
Sbjct 85 GAATGGAAACTGGTCATCGACTCCGAATTCTTCCGAGATTGCTTCATGTCTCACAACTCT 144
Query 127 TCCTCAGTCTCATGGTCAATCATTCAAACGAGACATCACATATTGTCACTTGACATCGTT 186
||||||||||||||||||||||| |||||||||| ||||| | || ||||||| ||||||
Sbjct 145 TCCTCAGTCTCATGGTCAATCATCCAAACGAGACCTCACAAACTGACACTTGAAATCGTT 204
Query 187 GGTCACCATGGATGCAAAACATGGGGACTTACTCGTTTTCCGGGATCTTTTGTGAGTTTC 246
||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||
Sbjct 205 GGTCACCATGGATGCAAAACATGGGGACTTACTCGTTCTCCCGGATCTTTAGTGAGTTTC 264
Query 247 TTTGCCGAGACCACAATCAGGAAACTACAAGTCTTAGCTTGTACCGATGGATTGGTCCTT 306
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 265 TTTGCCGAGACCACAATCAGGAAACTACAAGTCTTAGCTTGTACCGATGGGTTGGTCCTT 324
Query 307 ATTTACGCAGAAGCTAGTGATGGAACTCCTATGCATTACGTTGGTAGTCCTTTGTTTCAA 366
|||||| |||| || | | ||||||||||||| |||||||||||| |||||||||||||
Sbjct 325 CTTTACGTAGAATCTTGCGTTGGAACTCCTATGTATTACGTTGGTAATCCTTTGTTTCAA 384
Query 367 GAATGGTTTCAAATTCCTCTCCCTCCT---GACA--TC-C---AT-TT--GCAA--GATG 412
|| ||||||| ||| ||||||| |||| ||| || | || || | || | |
Sbjct 385 GAGTGGTTTCGAATCCCTCTCCGTCCTAAATACACTTCTCAAAATGTTGAGAAATTAAGG 444
Query 413 -ATCATAAGCGTTTCAACGACAGTGGATTGGTTACAAAGATGCAGAGTGGTACCGTTGTG 471
| || ||||||||| ||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 445 AACCACGAGCGTTTCAGCGACAGTGGATTGGTTACAAAGATGCAAAGTGGTATTGTTGTG 504
Query 472 AGTTACAAGGTTGTGTGGTTGATCGCTCACGCTTTTGCT-AGAGTCGATTTTGGGATTTA 530
|||||||||||||||||||||||||||||| |||||||| | ||||||||||| ||||||
Sbjct 505 AGTTACAAGGTTGTGTGGTTGATCGCTCACACTTTTGCTCA-AGTCGATTTTGCGATTTA 563
Query 531 CTCATCTGATACAGGGGAATGGGAAATTAAAAAAGTGCCTTGTCTTCATTCTGCCT-TCT 589
||||||| | ||||||||||||||||||||||| ||| |||||||||||||||||| | |
Sbjct 564 CTCATCTAACACAGGGGAATGGGAAATTAAAAATGTGACTTGTCTTCATTCTGCCTAT-T 622
Query 590 GGTTTAGTCATCACAAGCCCATTGCTTTAAATGGGATTCTTCATTGGCTTTCCAACCTCA 649
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 GGTTTAGTCATCACAAGTCCATTGCTTTAAATGGGATTCTTCATTGGCTTTCCAACCTCA 682
Query 650 CCGGTTCTTTTGTAGCTTACGATTTCTATGGAGGTCATGATGATGATGATGCGTGTGA-T 708
||||||||||| |||||||||||||||||||||||| || ||||||||||| | |
Sbjct 683 CCGGTTCTTTTTTAGCTTACGATTTCTATGGAGGTC------ATCATGATGCGTGT-AGT 735
Query 709 ATCATACATTTCCCCGATAGTGGAAAAGATGATGAGTTACGGCGTTTTAGGAGAACCTTG 768
||||| |||||||||||| |||||||||| | ||||||| ||||||| ||||||| |
Sbjct 736 ATCATTTATTTCCCCGATAATGGAAAAGATTACGAGTTACCGCGTTTTCGGAGAACAATC 795
Query 769 TCGACCTCGGAAGGGTCTATTGTGTACTTCAACGAGTTTGGTGGGAACGGAAACCGCATA 828
| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
Sbjct 796 ACTACCTCGGAAGGGTCTATTGTGTATTTCAACGAGTTTGGTGGGAACGCAAACCGCAAA 855
Query 829 TTACGGGTTTGGAGGCTGGTCAAGTACACAGATGGTCCTGAGGCGTGGCAGCTCTTTAGG 888
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 856 GTACGGGTTTGGAGGCTGGTCAAGTACACTGATGGTCCTGAGGCGTGGCAGCTCTTTTGG 915
Query 889 GAAGTCAGCTTGGTGACCT-TGATCGATTTAGGTATCTATTA-TATCCCTGTGGTAATGC 946
|||| |||||||| | || ||| | | |||||||| |||| | |||| ||||| ||||
Sbjct 916 GAAGCCAGCTTGGCG-TCTGTGACCAAGCTAGGTATCGATTACT-TCCCGGTGGTGATGC 973
Query 947 ATCCTTTGAACTCTGAGATCATCTACTTGTGGAGCAGAAACAAGAAAGGTATGGTATTGT 1006
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 974 ATCCTTTGAAGTCTGAGATCATCTACTTGTGGAGCAGAAACAAGAAAGGTATGGTCTTGT 1033
Query 1007 TTAACTTGAGGACACATGTGTTTAGTCTTCACAAGGAATTAGAAGACGAGACCAAGTGTA 1066
||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 1034 TTAACTTGAGGACGCATGTGTTTAGTCTTCACAAGGAATCCGAAGACGAGAGGAAGTGTA 1093
Query 1067 TGGATGGTTGCACCTTGAGCTTTAACAGGTGCAGCGAGTATATGGAGAGCATGT-ATGGA 1125
|||||||||||||||||||||||||| |||||| |||||||||||||| | | | || ||
Sbjct 1094 TGGATGGTTGCACCTTGAGCTTTAACTGGTGCAACGAGTATATGGAGACCGT-TCATAGA 1152
Query 1126 TACTTTTTCCCATCGTCTT-ACGGTGGTACTAAC-TGTCTCTTTGCTTCACAGTATGTTC 1183
||||||| |||||||| || | |||||| ||||| | |||| | ||||||||||||||||
Sbjct 1153 TACTTTTCCCCATCGT-TTCAAGGTGGTCCTAACCT-TCTCCTCGCTTCACAGTATGTTC 1210
Query 1184 TCCCTCGTTGGCTG-CACCGTCTCCCTCGTCCGCAGCCTTCT 1224
||||||||||| || | ||||||||||||||| |||||||||
Sbjct 1211 TCCCTCGTTGGTTGTC-CCGTCTCCCTCGTCCACAGCCTTCT 1251
> AT3G23970.1 | Symbols: | F-box family protein | chr3:8660447-8661688
REVERSE LENGTH=1242
Length=1242
Score = 1304 bits (706), Expect = 0.0
Identities = 1077/1248 (86%), Gaps = 57/1248 (5%)
Strand=Plus/Plus
Query 7 TTTGAAGTCTTGGTGCGACTTCCACTAAAAAGCCTCGCAAGATTCAGATCAGTGT-GCAG 65
|||||||| ||||||||||||||| | || ||||||||||||||||||||||| | | |
Sbjct 25 TTTGAAGTTTTGGTGCGACTTCCATTGAAGAGCCTCGCAAGATTCAGATCAGT-TAGGAA 83
Query 66 AGAATGGAAACTTCTGATCGACTCTGAATTCTTCCGAGACTACTTCATCTCGCTCAACTC 125
|||||||||||| | |||||||| |||||||||||||| | |||||| || | ||||||
Sbjct 84 AGAATGGAAACTGGTCATCGACTCCGAATTCTTCCGAGATTGCTTCATGTCTCACAACTC 143
Query 126 TTCCTCAGTCTCATGGTCAATCATTCAAACGAGACATCACATATTGTCACTTGACATCGT 185
|||||||||||||||||||||||| |||||||||| ||||| | || ||||||| |||||
Sbjct 144 TTCCTCAGTCTCATGGTCAATCATCCAAACGAGACCTCACAAACTGACACTTGAAATCGT 203
Query 186 TGGTCACCATGGATGCAAAACATGGGGACTTACTCGTTTTCCGGGATCTTTTGTGAGTTT 245
|||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||
Sbjct 204 TGGTCACCATGGATGCAAAACATGGGGACTTACTCGTTCTCCAGGATCTTTAGTGGGTTT 263
Query 246 CTTTGCCGAGACCACAATCAGGAAACTACAAGTCTTAGCTTGTACCGATGGATTGGTCCT 305
||||||||| |||||||||| || ||||| ||||||||||||||||||||| ||||||||
Sbjct 264 CTTTGCCGACACCACAATCAAGAGACTACGAGTCTTAGCTTGTACCGATGGGTTGGTCCT 323
Query 306 TATTTACGCAGAAGCTAG-TGATGGAACTCCTATGCATTACGTTGGTAGTCCTTTGTTTC 364
||||||| ||||| |||| | |||||||||| |||||||||||||||| |||| ||||||
Sbjct 324 TATTTACACAGAAACTAGCT-ATGGAACTCCAATGCATTACGTTGGTAATCCTCTGTTTC 382
Query 365 AAGAATGGTTTCAAATTCCTCTCCCTCCTGACATCCATTTGC-AA-----GA-TG-AT-C 415
||||||||| || ||| ||||||||| || || || |||||| || || | || |
Sbjct 383 AAGAATGGTGTCCAATCCCTCTCCCTTCTTACTTCTATTTGCAAAGTGTTGAGAGAATAC 442
Query 416 ---AT-A--AGCGTTTCAACGACAGTGGATTGGTTACAAAGATGCAGAGTGGTACCGTTG 469
|| | |||||||||||||||||| |||||||| |||||||||||||||| ||||||
Sbjct 443 GTAATCACCAGCGTTTCAACGACAGTGCATTGGTTATAAAGATGCAGAGTGGTGCCGTTG 502
Query 470 TGAGTTACAAGGTTGTGTGGTTGATCGCTCACGCTTTTGCTA-GAGTCGA-TTTTGGGAT 527
||||||||||||||||||||||| || ||| | | | | | | |||| |||| |||
Sbjct 503 TGAGTTACAAGGTTGTGTGGTTGTTCCCTCGCAATAGTACAACCA-TCGACTTTT-TGAT 560
Query 528 TTACTCATCTGATACAGGGGA-ATGGGAAATTAAAAAAGTGCCTTGTCTTCATTCTGCCT 586
||||||||||||||| || | |||||| | || | | |||||||||||||| |||
Sbjct 561 TTACTCATCTGATAC-TGGCATGTGGGAAGCTCGAATTGCGACTTGTCTTCATTCTTCCT 619
Query 587 TCTGGTTTAGTCATCACAAGCCCATTGCTTTAAATGGGATTCTTCATTGGCTTTCCAACC 646
|||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 620 TCTGGTTTAGTCATCACAAGCCGATTGCTTTGAATGGGATTCTTCATTGGCTTTGCAATT 679
Query 647 TCACCGGTTCTTTTGTAGCTTACGATTTCTATGGAGGTCATGATGATGATGATGCGTGTG 706
||| | |||||||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct 680 TCAGCACTTCTTTTGTAGCTTACGATTTCTATGGAGGTCATGATGAT--T-ATGCATGTC 736
Query 707 ATATCATA-CATTTCCCCGATAGTGGAAAAGATGATG---AGTTACGGCGTTTTAGGAGA 762
|||||||| | |||||| ||| ||| ||||||||||| ||||||||||||||||||||
Sbjct 737 ATATCATATC-TTTCCCTGATTGTGAAAAAGATGATGATCAGTTACGGCGTTTTAGGAGA 795
Query 763 ACCTTGTCGACCTCGGAAGGGTCTATTGTGTACTTCAACGAGTTTGGTGGGAACGGAAAC 822
|| |||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 796 ACATTGTCGACCTCGGATGGGTCTATTGTCTACTTCAACGAGTTTGGTGAGAACGGAAAC 855
Query 823 CGCATATTACGGGTTTGGAGGCTGGTCAAGTACACAGATGGTCCTGAGGCGTGGCAGCTC 882
|| | |||||| ||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 856 CGAAGATTACGTGTTTGGAGGCTGGTCAAGTACACTGGTGGTCCTGAGGCGTGGCAGCTC 915
Query 883 TTTAGGGAAGTCAGCTTGGTGACCT-TGATCGATTTAGGTATCTATTA-TATCCCTGTGG 940
||| ||||||||||||||| | || ||| | | |||||||| |||| | |||| ||||
Sbjct 916 TTTTGGGAAGTCAGCTTGGCG-TCTGTGACCAAGCTAGGTATCGATTACT-TCCCGGTGG 973
Query 941 TAATGCATCCTTTGAACTCTGAGATCATCTACTTGTGGAGCAGAAACAAGAAAGGTATGG 1000
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 TGATGCATCCTTTGAAGTCTGAGATCATCTACTTGTGGAGCAGAAACAAGAAAGGTATGG 1033
Query 1001 TATTGTTTAACTTGAGGAC-ACATGTGTTTAGTCTTCACAAGGAATTAGAAGACGAGACC 1059
| ||||||||||||||||| | |||||||||||||||||||||||| || |||||||||
Sbjct 1034 TTTTGTTTAACTTGAGGACTA-ATGTGTTTAGTCTTCACAAGGAATCCGAGGACGAGACC 1092
Query 1060 AAGTGTATGGATGGTTGCACCTTGAGCTTTAACAGGTGCAGCGAGTATATGGAGAGCATG 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1093 AAGTGTATGGATGGTTGCACCTTGAGCTTTAACAGGTGCAGCGAGTATATGGAGA-C-T- 1149
Query 1120 TATGGATACTTTTTCCCATCGTCTTACGGTGGTACTAACTGTCTCTTTGCTTCACAGTAT 1179
|| ||| | | | | |||||| |||||| |||| | ||||||||||||
Sbjct 1150 -ATCCATA---------A-C-TAT---GGTGGTCCTAACTATCTCCTCGCTTCACAGTAT 1194
Query 1180 GTTCTCCCTCGTTGGCTGCACCGTCTCCCTCGTCCGCAGCCTTCTTAG 1227
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GTTCTTCCTCGTTGGCTGCACCGTCTCCCTCGTCCGCAGCCTTCTTAG 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60290854545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5