BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905564
Length=1479
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24480.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 2350 0.0
AT4G13340.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1203 0.0
AT4G18670.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 966 0.0
AT1G41930.1 | Symbols: | transposable element gene | chr1:1568... 195 1e-48
> AT3G24480.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr3:8901154-8902638 REVERSE LENGTH=1485
Length=1485
Score = 2350 bits (1272), Expect = 0.0
Identities = 1417/1487 (95%), Gaps = 10/1487 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAACAACACCActcaatctctcctcctccttctcctcttcttcttctccgtcact 60
||||||||||||||||||||||||||||| |||||||||||||||||||||| | || |
Sbjct 1 ATGAAGAACAACACCACTCAATCTCTCCTTCTCCTTCTCCTCTTCTTCTTCTTCTTCTTT 60
Query 61 gaaatctctcattctctttcgatctcatccAATGCTCGTCTCTCCGACACCGAAGTCAGA 120
||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||
Sbjct 61 GAAATCTCTCATTCTCTCTCAATCTCATCCAATGCTCCTCTCTCCGACACCGAAGTCAGA 120
Query 121 TTCATCCAACGCCGTCAACTTCTCTACTACCGCGACGAGTTCGGTGACCGCGGTGAGAAA 180
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 TTCATCCAACGCCGTCAACTTCTCTACTACCGCGACGAGTTCGGTGACCGTGGTGAGAAT 180
Query 181 GTAACCGTAGATCCATCTCTAATCTTCGAGAATCCACGACTACGAAGTGCTTACATAGCT 240
|| || ||||||||||| ||||||||||||||||| || || || |||||||||||||||
Sbjct 181 GTCACAGTAGATCCATCACTAATCTTCGAGAATCCGCGGCTTCGTAGTGCTTACATAGCT 240
Query 241 CTTCAAGCTTGGAAACAAGCTATTCTCTCTGATCCTAATAATATCACTGTTAATTGGATC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTTCAAGCTTGGAAACAAGCTATTCTCTCTGATCCTAATAATATCACTGTTAATTGGATC 300
Query 301 GGATCCAATGTCTGTAACTACACCGGAGTTTTCTGTTC-ACGAGCTCTTGATAACCGGAA 359
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 301 GGATCCAATGTCTGTAACTACACCGGAGTTTTCTGTTCTAA-AGCTCTTGATAACCGGAA 359
Query 360 GATCCGTACCGTCGCCGGAATCGATCTCAATCACGCCGATATCGCTGGGTATTTACCTGA 419
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 360 GATCCGTACCGTCGCCGGAATCGATCTCAACCACGCCGATATCGCTGGGTATTTACCTGA 419
Query 420 AGAGCTTGGTTTGTTAACAGATCTAGCTTTGTTTCATGTTAATTCGAATCGATTCTGTGG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGAGCTTGGTTTGTTAACAGATCTAGCTTTGTTTCATGTTAATTCGAATCGATTCTGTGG 479
Query 480 AACTGTTCCTCATAAGTTCAAGCAGCTTAAGCTTTTGTTCGAGCTTGATCTTAGTAACAA 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TACTGTTCCTCATAAGTTCAAGCAGCTTAAGCTTTTGTTCGAGCTTGATCTTAGTAACAA 539
Query 540 TCGATTCGCCGGAAAGTTTCCAACGGTGGTTCTTCATTTGCCGTCGTTGAAGTTCTTAGA 599
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCGGTTCGCCGGAAAGTTTCCCACGGTGGTTCTTCATTTGCCGTCGTTGAAGTTCTTAGA 599
Query 600 TCTCCGGTTTAATGAGTTTGAAGGAACTGTACCGAAAGAGCTTTTTAGTAAAAATCTAGA 659
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 600 TCTCCGGTTTAATGAGTTTGAAGGAACCGTACCGAAAGAGCTTTTTAGTAAAAATCTAGA 659
Query 660 TGCGATTTTCATTAACCATAACCGGTTCCGGTTTGAGTTACCGGATAATTTCGGTGATTC 719
||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 TGCGATTTTTATAAACCATAACCGGTTCCGGTTTGAGTTACCGGAAAATTTCGGTGATTC 719
Query 720 TCCGGTTTCGGTTATTGTTCTTGCGAATAATCATTTCCATGGTTGTATTCCGACGAGTTT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCCGGTTTCGGTTATTGTTCTTGCGAATAATCATTTCCATGGTTGTATTCCGACGAGTTT 779
Query 780 GGTGGAGATGAAGAATCTTAATGAGATTATTTTCATGAATAATGGTTTGAATTCTTGTTT 839
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 GGTGGAGATGAAGAATCTTAATGAGATTATTTTCATGAACAATGGTTTGAATTCTTGTTT 839
Query 840 ACCGGCGGATATCGGAAGGTTGAAGAACGTGACGGTGTTTGATGTTAGTTTTAATGAGCT 899
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 840 ACCGGCGGATATCGGAAGGTTGAAGAATGTGACGGTGTTTGATGTTAGTTTTAATGAGCT 899
Query 900 TGTTGGTCCGTTGCCGAAGAGTGTTGGTGGTATGGTGGCGGTTGAGCAGTTGAATGTGGC 959
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 900 TGTTGGTCCGTTGCCGGAGAGTGTTGGTGGTATGGTGGAGGTTGAGCAGTTGAATGTTGC 959
Query 960 TCATAATCTGTTATCTGGGAAGATTCCGGCGAGTATTTGTCAGCTTCCGAAGCTTGAGAA 1019
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 960 TCATAATTTGTTATCTGGGAAGATTCCGGCGAGTATTTGTCAGCTTCCTAAGCTTGAGAA 1019
Query 1020 TTTCACTTATAGTTATAATTTCTTTACTGGTGAAGCTCCTGTGTGTTTGAGGTTGCCTGA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1020 TTTCACTTATAGTTATAATTTCTTTACTGGTGAAGCTCCTGTGTGTTTGAGGTTGTCTGA 1079
Query 1080 GTTTGATGATCGGAGAAATTGTTTGCCTGGAAGACCTGCTCAGAGATCTTCACGTCAATG 1139
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1080 GTTTGATGATCGGAGAAATTGTTTGCCCGGAAGACCTGCTCAGAGATCTTCACGGCAATG 1139
Query 1140 TTCAGCTTTCTTGTCACGGCCGCCAGTGGATTGTGGATCTTTTGGTTGTGGTCGTTCTGT 1199
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1140 TTCAGCTTTCTTGTCACGGCCTTCGGTGGATTGTGGATCTTTTGGTTGTGGTCGTTCTGT 1199
Query 1200 T---AAACCGTCTCCTCCTATTGTAGCATTACCGCCGCCGCCTCCGCCATCGCCGCCGTT 1256
| ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1200 TGTTAAACCGTCTCCACCTATTGTAGCATTACCGCCGCCTCCTCCGCCATCGCCTCCGTT 1259
Query 1257 ACCTCCTAC-TGTCTActctcctccgccgtcacctcctgtctactctcctccgccgtcac 1315
|||||| || ||| |||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1260 ACCTCC-ACCTGTTTACTCTCCTCCGCCGTCACCTCCTGTCTTCTCTCCTCCACCGTCAC 1318
Query 1316 ctcctgtatactctcctccACCGCCGCCCCCTGTCTACT-C--TCCGCCACCGCCACCGC 1372
| ||||||||||||||||||||||| || | || | | | | | || || |||||||
Sbjct 1319 CCCCTGTATACTCTCCTCCACCGCCACCATCAATCCATTACAGTTCTCCTCCTCCACCGC 1378
Query 1373 CAGTCCATCACAGTTCTCCTCCACCTCCATCACCTGAATTTGAAGGGCCATTACCGCCGG 1432
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1379 CAGTCCATCACAGTTCTCCTCCACCACCATCACCTGAATTTGAAGGGCCATTACCGCCGG 1438
Query 1433 TTATCGGAGTATCCTATGCATCTCCTCCACCACCACCCTTCTATTGA 1479
| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1439 TGATCGGAGTATCCTATGCATCTCCCCCACCACCACCCTTCTATTGA 1485
> AT4G13340.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr4:7758610-7761057 FORWARD LENGTH=2448
Length=2448
Score = 1203 bits (651), Expect = 0.0
Identities = 946/1086 (87%), Gaps = 29/1086 (3%)
Strand=Plus/Plus
Query 184 ACCGTAGATCCATCTCTAATCTTCGAGAATCC-ACGACTACGAAGTGCTTACATAGCTCT 242
||||| ||||| ||||||| |||||||||||| | || | |||| |||||| ||||||||
Sbjct 160 ACCGTTGATCCTTCTCTAAACTTCGAGAATCCGA-GATTGCGAAATGCTTATATAGCTCT 218
Query 243 TCAAGCTTGGAAACAAGCTATTCTCTCTGATCCTAATAATATCACTGT-TAATTGGATCG 301
||||||||||||||||| |||||||||||||| || ||| ||||| | ||||||||||
Sbjct 219 ACAAGCTTGGAAACAAGCGATTCTCTCTGATCCAAACAATTTCACT-TCGAATTGGATCG 277
Query 302 GATCCAATGTCTGTAACTACACCGGAGTTTTCTGTTCAC-GAGCTCTTGATAACCGGAAG 360
||||||||||||||||||||||||||||||||||||| | | || |||||||| ||||||
Sbjct 278 GATCCAATGTCTGTAACTACACCGGAGTTTTCTGTTCTCCG-GCGCTTGATAATCGGAAG 336
Query 361 ATCCGTACCGTCGCCGGAATCGATCTCAATCACGCCGATATCGCTGGGTATTTACCTGAA 420
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 337 ATTCGTACCGTCGCCGGAATCGATCTCAATCACGCAGATATCGCTGGTTATTTACCTGAA 396
Query 421 GAGCTTGGTTTGTTAACAGATCTAGCTTTGTTTCATGTTAATTCGAATCGATTCTGTGGA 480
||||||||||||||| ||||||| |||||||||||||||||||| || || || |||||
Sbjct 397 GAGCTTGGTTTGTTATCAGATCTTGCTTTGTTTCATGTTAATTCAAACCGGTTTTGTGGT 456
Query 481 ACTGTTCCTCATAAGTTCAAGCAGCTTAAGCTTTTGTTCGAGCTTGATCTTAGTAACAAT 540
||||| || || ||| || | |||||||||||| |||||||||||||||||||||||
Sbjct 457 ACTGTACCACACCGGTTTAACCGGCTTAAGCTTTTATTCGAGCTTGATCTTAGTAACAAC 516
Query 541 CGATTCGCCGGAAAGTTTCCAACGGTGGTTCTT-CATTTGCCGTCGTTGAAGTTCTTAGA 599
|| ||||| || |||||||| ||||| || ||| || || |||||||||||||| |||||
Sbjct 517 CGGTTCGCTGGGAAGTTTCCGACGGTTGT-CTTGCAATTACCGTCGTTGAAGTTTTTAGA 575
Query 600 TCTCCGGTTTAATGAGTTTGAAGGAACTGTACCGAAAGAGCTTTTTAGTAAAAATCTAGA 659
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 576 TCTCCGGTTTAATGAATTTGAAGGAACTGTACCGAAAGAGCTTTTTAGTAAAGATCTTGA 635
Query 660 TGCGATTTTCATTAACCATAACCGGTTCCGGTTTGAGTTACCGGATAATTTCGGTGATTC 719
||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 636 CGCGATTTTCATAAACCATAACCGGTTCCGGTTTGAATTACCGGAGAATTTTGGTGATTC 695
Query 720 TCCGGTTTCGGTTATTGTTCTTG-CGAATAATCATTTCCATGGTTGTATTCCGA-CGAGT 777
|||||||||||||||||| ||| ||||||| | |||||||||||| | || | ||||
Sbjct 696 GCCGGTTTCGGTTATTGTT-TTGGCGAATAACCGGTTCCATGGTTGTGTACC-ATCGAGC 753
Query 778 TTGGTGGAGATGAAGAATCTTAATGAGATTATTTTCATGAATAATGGT-TTGAATTCTTG 836
||||||||||||||||||||||| ||||| || |||||||| |||||| || ||||||||
Sbjct 754 TTGGTGGAGATGAAGAATCTTAACGAGATCATCTTCATGAACAATGGTCTT-AATTCTTG 812
Query 837 TTTACCGGCGGATATCGGAAGGTTGAAGAACGTGACGGTGTTTGATGTTAGTTTTAATGA 896
||||||| | ||||||||| |||| |||||||||||||||||||| || |||||||||||
Sbjct 813 TTTACCGTCTGATATCGGACGGTTAAAGAACGTGACGGTGTTTGACGTCAGTTTTAATGA 872
Query 897 GCTTGTTGGTCCGTTGCCGAAGAGTGTTGGTG-GTATGGTGGCGGTTGAGCAG-TTGAAT 954
|||||||| ||||| ||| |||||||||||| | ||||| |||| |||||| || |||
Sbjct 873 ACTTGTTGGGCCGTTACCGGAGAGTGTTGGTGAG-ATGGTTTCGGTGGAGCAGCTT-AAT 930
Query 955 GTGGCTCATAATCTGTTATCTGGGAAGATTCCGGCGAGTATTTGTCAGCTT-CCGAAGCT 1013
||||| |||||| |||| || ||||||||||||||||||||||||||| || ||||||||
Sbjct 931 GTGGCGCATAATATGTTGTCGGGGAAGATTCCGGCGAGTATTTGTCAG-TTACCGAAGCT 989
Query 1014 TGAGAATTTCACTTATAGTTATAATTTCTTTACTGGTGAAGCTCCTGTGTGTTTGAGGTT 1073
||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||
Sbjct 990 TGAGAATTTCACTTATAGTTACAATTTCTTTACCGGAGAAGCGCCTGTGTGTTTGAGGTT 1049
Query 1074 GCCTGAGTTTGATGATCGGAGAAATTGTTTGCCTGGAAGACCTGCTCAGAGATCTTCACG 1133
||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| || |
Sbjct 1050 GCCGGAGTTTGATGATCGGAGAAATTGTTTGCCGGGAAGACCTGCTCAGAGGTCTCCAGG 1109
Query 1134 TCAATGTTCAGC-TTTCTTGTCACGGCCGCCAGTGGATTGTGGATCTTTTGGTTGTGGTC 1192
|||||| ||| ||| ||||| || ||||| || |||||||||| ||| ||||||| |
Sbjct 1110 GCAATGTAAAGCGTTT-TTGTCTCGTCCGCCGGTAAATTGTGGATCGTTTAGTTGTGGCC 1168
Query 1193 GTTCTGT-TAAACCGTC-TCCTCCTATTGTA--GCA-TTACCGCCGCCGCCTCCGCCATC 1247
||||||| | || || |||||| ||||| || ||||| ||||| || ||||||
Sbjct 1169 GTTCTGTGTCG-CC-TCGTCCTCCGGTTGTAACGCCGTTACCACCGCCTTCTTTGCCATC 1226
Query 1248 GCCGCC 1253
|||||
Sbjct 1227 TCCGCC 1232
> AT4G18670.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr4:10275462-10278491 REVERSE LENGTH=3030
Length=3030
Score = 966 bits (523), Expect = 0.0
Identities = 930/1122 (83%), Gaps = 46/1122 (4%)
Strand=Plus/Plus
Query 99 TCTCTCCGACACCGAAGTCAGATTCATCCA-ACGCCGTCAACTTCTCTACTACCGCGACG 157
||||||||||| |||||| | | || || || |||||||||||||||| ||||||||
Sbjct 111 TCTCTCCGACAATGAAGTCCGGCTAAT-CACACAACGTCAACTTCTCTACTTCCGCGACG 169
Query 158 AGTTCGGTGACCGCGGTGAGAAAGT-AACCGTAGATCCATCTCTAATCTTCGAGAATCCA 216
||||||| |||||||| ||||| || | ||| || ||||||||| ||||||||||||||
Sbjct 170 AGTTCGGCGACCGCGGCGAGAATGTCGA-CGTTGACCCATCTCTAGTCTTCGAGAATCCA 228
Query 217 CGACTACGAAGTGCTTACATAGCTCTTCAAGCTTGGAAACAAGCTATTCTCTCTGATCCT 276
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 CGACTTCGAAATGCTTACATAGCTCTTCAAGCTTGGAAACAAGCTATTCTCTCTGATCCA 288
Query 277 AATAA-TATCACTGTTAATTGGATCGGATCCAATGTCTGTAACTACACCGGAGTTTTCTG 335
|| || | |||| || |||||||| || |||| || | |||||||| |||| |||
Sbjct 289 AACAACT-TCACAACAAACTGGATCGGTTCTGATGTTTGCAGTTACACCGGCGTTTACTG 347
Query 336 TTCAC-GAGCTCTT-GATAACCGGAAGATCCGTACCGTCGCCGGAATCGATCTCAATCAC 393
| | | | ||| || |||||||| ||||||||||||||||||||| ||||| || |||
Sbjct 348 TGCTCCG-GCT-TTAGATAACCGCCGGATCCGTACCGTCGCCGGAATAGATCTAAACCAC 405
Query 394 GCCGATATCGCTGGGTATTTACCTGAAGAGCTTGGTTTGTTAACAGATCTAGCTTTGTTT 453
|| || || ||||| ||| ||||| ||||||||||||||||||||||||| |||||||||
Sbjct 406 GCTGACATTGCTGGTTATCTACCTCAAGAGCTTGGTTTGTTAACAGATCTCGCTTTGTTT 465
Query 454 CATGTTAATTCGAATCGATTCTGTGGAACTGTTCCTCATAAGTTCAAGCAG-CTTAAGCT 512
||| ||||||| || || || |||||||| || || ||| ||| || | | ||||||||
Sbjct 466 CATATTAATTCAAACCGGTTTTGTGGAACCGTACCGCATCGGTTTAACC-GTCTTAAGCT 524
Query 513 TTTGTTCGAGCTTGATCTTAGTAACAATCGATTCGCCGGAA-AGTTTCCAACGGTGGTTC 571
||| |||||||||||||| ||||| || || |||||||||| | || || || || || |
Sbjct 525 TTTATTCGAGCTTGATCTCAGTAATAACCGGTTCGCCGGAATA-TTCCCTACTGTTGTCC 583
Query 572 TTCATTTGCCGTCGTTGAAGTT-CTTAGATCTCCGGTTTAATGAGTTTGAAGGAACTGTA 630
|||| || |||||||||||||| || ||||| ||||||| || || |||||| |||||
Sbjct 584 TTCAGTTACCGTCGTTGAAGTTTCTG-GATCTAAGGTTTAACGAATTCGAAGGACCTGTA 642
Query 631 CCGAA-AGAGCTTTTTAGTAAAAATCTAGATGCGATTTTCATTAACCATAACCGGTTCCG 689
|| || |||||| || || ||| |||| ||||||||||| || |||||||||||||||||
Sbjct 643 CC-AAGAGAGCTCTTCAGCAAAGATCTTGATGCGATTTTTATCAACCATAACCGGTTCCG 701
Query 690 GTTTGAGTTACCGGATAATTTCGGTGATTCTCCGGTTTCGGTTATTGTTCTTGCGAATAA 749
||||||||||||||||||||| || |||||||||||||| ||||||||| | ||||||||
Sbjct 702 GTTTGAGTTACCGGATAATTTGGGAGATTCTCCGGTTTCCGTTATTGTTGTGGCGAATAA 761
Query 750 TCATTTCCATGGTTGTATTCCGACGAGTTTGG-TGGAGATGAAGAATCTT-AATGAGATT 807
||||||||| |||||||||||||||||||||| || | |||| ||||||| || |||||
Sbjct 762 TCATTTCCACGGTTGTATTCCGACGAGTTTGGGTG-ATATGAGGAATCTTGAA-GAGATC 819
Query 808 ATTTTCATG-AATAATGG-TTTGAATTCTTGTTTACCGGCGGATATCGGAAGGTTGAAGA 865
|| |||||| || ||||| ||| ||||||||||||||| || | |||||| ||||||| |
Sbjct 820 ATCTTCATGGAA-AATGGGTTT-AATTCTTGTTTACCGTCGCAGATCGGACGGTTGAAAA 877
Query 866 ACGTGACGGTGTTTGATGTT-AGTTTTAATGAGCTTGTTGG-TCCGTTGCCGAAGAGTGT 923
|||| ||||| |||||| || |||||||| || |||||||| || ||| ||| |||| |
Sbjct 878 ACGTAACGGTATTTGAT-TTCAGTTTTAACGAACTTGTTGGGTC-GTTACCGGCGAGTAT 935
Query 924 TGGTGGTATGGTGGCGGTTGAGCAGTTGAATGTGGCTCATAATCTG-TTATCTGGGAAGA 982
||| || ||||| || | |||||||| |||||||| |||||| | || ||||| ||||
Sbjct 936 TGGCGGGATGGTTTCGATGGAGCAGTTAAATGTGGCGCATAATA-GATTCTCTGGTAAGA 994
Query 983 TTCCGGCGAGTATTTGTCAGCTT-CCGAAGCTTG-AGAATTTCACTTAT-AGTTATAATT 1039
||||||||| |||||||||| || |||| | ||| |||||||||||| | ||||||||||
Sbjct 995 TTCCGGCGACTATTTGTCAG-TTGCCGAGG-TTGGAGAATTTCACTT-TCAGTTATAATT 1051
Query 1040 TCTTTACTGGTGAAGCT-CCTGTGTGT-TTGAGGTTGCCTGAGTTTGATGATCGGAGAAA 1097
|||| ||||| || || || || ||| ||| ||||||||| ||||||||||||| | ||
Sbjct 1052 TCTTCACTGGAGA-GCCGCCGGTTTGTCTTG-GGTTGCCTGGGTTTGATGATCGGCGGAA 1109
Query 1098 TTGTTTGCCTG-GAAGACCTGCTCAGAGATCTTCACGTCAATGTTCAGCTTTCT-TGTCA 1155
||||||||| | || ||||||| |||||||| || | |||||| | ||||||| | ||
Sbjct 1110 TTGTTTGCCGGCGA-GACCTGCGCAGAGATCACCAGGGCAATGTGCGGCTTTCTCT-TCT 1167
Query 1156 CGGCCGCCAGTGGATTGTGGATCTTTTGGTTGTGGTCGTTCT 1197
| ||||| ||||||||||| || ||||| ||||||||||||
Sbjct 1168 CTTCCGCCGGTGGATTGTGGTTCCTTTGGATGTGGTCGTTCT 1209
> AT1G41930.1 | Symbols: | transposable element gene | chr1:15685411-15695693
FORWARD LENGTH=10283
Length=10283
Score = 195 bits (105), Expect = 1e-48
Identities = 147/166 (89%), Gaps = 8/166 (5%)
Strand=Plus/Minus
Query 876 GTTTGATGTTAGTTTTAATGAGCTTGTTGGTCCGTTGCCGAAGAGTGTTGGTGGTATGGT 935
|||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 2754 GTTTGATGTTAGTTTTAATGAGCTTGTTGGTCCGTTTCCGGAGATTGTTGGTGGTATGGT 2695
Query 936 GGCGGTTGAGCAGTTGAATGTGGCTCATAATCTGTTATCTGGGAAGATTCCGGCGAGTAT 995
|| |||| |||||||||||| ||||||||| ||||||||||||||||||||||| |
Sbjct 2694 GGAAGTTGGGCAGTTGAATGTTGCTCATAATTTGTTATCTGGGAAGATTCCGGCG--T-- 2639
Query 996 TTGTCAGCTTCCGAAGCTTGAGAATTTCACTTATAGTTATAATTTC 1041
|| ||||| |||||||||||||||||||||||||||| ||||
Sbjct 2638 ----CAACTTCCAAAGCTTGAGAATTTCACTTATAGTTATAGTTTC 2597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72941391885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5