BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905565
Length=585
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05670.2 | Symbols: | signal recognition particle binding |... 773 0.0
> AT5G05670.2 | Symbols: | signal recognition particle binding
| chr5:1695730-1698124 REVERSE LENGTH=1113
Length=1113
Score = 773 bits (418), Expect = 0.0
Identities = 496/534 (93%), Gaps = 3/534 (1%)
Strand=Plus/Plus
Query 53 AGAAAGGAAAAATCAATCCTGTTCATCTTGTTGATGTTCCTGGGCACTCTCGGCTTCGAC 112
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 AGAAAGGAAAAATCAAGCCTGTTCATCTTGTTGATGTTCCTGGGCACTCTCGGCTTCGAC 514
Query 113 CCAAGCTTGAAGAATTCTTGCCCCAAGCAGCTGCCATTGTGTTTGTAGTGGATGCCTTGG 172
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 515 CCAAGCTAGAAGAATTCTTGCCCCAAGCAGCTGCCATTGTGTTCGTAGTGGATGCCTTGG 574
Query 173 AGTTCCTCCCAAACTGTCGTGCAGCTTCAGAGTACCTATATGATATTTTGACCAATGCGA 232
|||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 575 AGTTCCTCCCAAACTGTCGTGCAGCTTCAGAGTACCTATACGAGATTCTGACCAATGCGA 634
Query 233 ATGTTGTCAAGAACAAGATTTCAGTCCTCCTTTGCTGTAACAAGACAGATAAACTCACTG 292
||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 635 ATGTTGTCAAGAAGAAGATTCCAGTCCTCCTTTGCTGTAACAAGACCGATAAACTCACTG 694
Query 293 CACACACCAAGGAGTTTATTCGGAAGCAGATGGAGAAAGAAATTGAGAAATTGAGGGCTT 352
||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||
Sbjct 695 CACACACCAAGGAGTTTATCCGGAAGCAAATGGAGAAAGAAATTGAGAAACTGAGGGCTT 754
Query 353 CTAGGAGTGCGGTATCTA-TAGCTGATATAGCGAACGACTTCAGCATTGGAATTGAAGGA 411
| |||||||| || |||| | |||||||||||||| ||||||| |||||||||||| |||
Sbjct 755 CAAGGAGTGCAGTCTCTACT-GCTGATATAGCGAATGACTTCACCATTGGAATTGAGGGA 813
Query 412 GAAGTGTTCTCCTTCTCGCATTGCTACAACAAAGTCACTGTAGCTGAGGCATCTGGACTC 471
||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 814 GAAGTGTTCTCCTTCACGCATTGCTCCAACAAAGTCACTGTCGCTGAGGCATCTGGACTT 873
Query 472 ACCGGAGAAACCGTCCAGATCCAAGACTTCATTCGAGAATACATCAAGCCTTTAGCTCAA 531
|||||||||||| ||||||| |||||||||||||||||||||||||||| | ||||| |
Sbjct 874 ACCGGAGAAACCATCCAGATTGAAGACTTCATTCGAGAATACATCAAGCCATGAGCTCCA 933
Query 532 ACGTGCATTAATAGATTGAATCTACGACTAGATTCTTATGCCTTTGGTCTGTGA 585
|| ||| || ||||||||||||||| || || ||||||||| ||||| ||||||
Sbjct 934 ACATGCCTTCATAGATTGAATCTACCACAAGTTTCTTATGC-TTTGGGCTGTGA 986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28131122320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5