BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905572

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G64730.1 | Symbols:  | Transducin/WD40 repeat-like superfami...   139    2e-32


> AT5G64730.1 | Symbols:  | Transducin/WD40 repeat-like superfamily 
protein | chr5:25873112-25875267 FORWARD LENGTH=1180
Length=1180

 Score =  139 bits (75),  Expect = 2e-32
 Identities = 83/87 (95%), Gaps = 0/87 (0%)
 Strand=Plus/Plus

Query  454  CAACCAGTTAATTGTATATTGATATCAAATGATGGAAACTGCGTTTTAGCTGGTTGCTTG  513
            ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  587  CAACCGGTTAACTGTATATCGATATCAAATGATGGAAACTGCGTTTTAGCTGGTTGCTTG  646

Query  514  GATTCTACTATGCGTCTACTTGACAGG  540
            ||||||||| |||||||||||||||||
Sbjct  647  GATTCTACTCTGCGTCTACTTGACAGG  673



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26021288146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5