BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905576
Length=255
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24513.1 | Symbols: | Encodes a defensin-like (DEFL) family... 357 3e-98
> AT3G24513.1 | Symbols: | Encodes a defensin-like (DEFL) family
protein. | chr3:8933920-8934390 FORWARD LENGTH=258
Length=258
Score = 357 bits (193), Expect = 3e-98
Identities = 238/259 (92%), Gaps = 5/259 (2%)
Strand=Plus/Plus
Query 1 ATGATGAACGTTTCTCTCAAACTGTCACTCTTGATTTTCATTTTGGTCATCACATCTAAT 60
||||| |||||||||||||| | |||||||||||||||||||| ||||||||||||||||
Sbjct 1 ATGATTAACGTTTCTCTCAAGCGGTCACTCTTGATTTTCATTTCGGTCATCACATCTAAT 60
Query 61 ATTGGATCAGAAGCAAGAGAGCTAACCGGAGTTGATAAGAAACTCGAAGTTGCTACCGGA 120
||||||||||||||||||||||||||||||| || |||||||||||||||||| ||| ||
Sbjct 61 ATTGGATCAGAAGCAAGAGAGCTAACCGGAGCTGGTAAGAAACTCGAAGTTGCCACCAGA 120
Query 121 AGTTCAAATTACGGC-GGCACTGCCAGGACCTTGGTG---GCCCGACCTTGCAAAAGGGA 176
||||||||||||| | |||||||| ||||||||| || |||||||||||| |||||||
Sbjct 121 AGTTCAAATTACG-CAGGCACTGCAAGGACCTTGTTGCAAGCCCGACCTTGCCAAAGGGA 179
Query 177 TGTTGATTGTAACCATCAATGTCCCAGAATCCAAGGAGGACAATGCAATCATCGCCATGG 236
||||||||||||| ||||||||| |||||||||||||||||||||||| ||| ||||||
Sbjct 180 TGTTGATTGTAACTTTCAATGTCCTAGAATCCAAGGAGGACAATGCAATAATCACCATGG 239
Query 237 CACATGTGATTGTTTCTAA 255
|||||||||||||||||||
Sbjct 240 CACATGTGATTGTTTCTAA 258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11611850019
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5