BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905580
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24540.1 | Symbols: | Protein kinase superfamily protein | ... 1280 0.0
AT3G24550.1 | Symbols: ATPERK1, PERK1 | proline extensin-like r... 725 0.0
AT3G24400.1 | Symbols: | pseudogene, protein kinase family, co... 329 3e-89
> AT3G24540.1 | Symbols: | Protein kinase superfamily protein
| chr3:8952903-8955621 FORWARD LENGTH=1530
Length=1530
Score = 1280 bits (693), Expect = 0.0
Identities = 874/959 (91%), Gaps = 21/959 (2%)
Strand=Plus/Plus
Query 98 ctcctcctcctcctcGGCGGTCTCCCTCCACAT-CACCTCCGCCTGGGTTGGGCAGTCGG 156
|||| || ||||||| ||||||||||||||||| || |||| ||| ||||||| | |||
Sbjct 209 CTCCACCGCCTCCTCCGCGGTCTCCCTCCACATCCA-CTCCACCTAGGTTGGGAAATCGA 267
Query 157 AGCCCTCCACCTCCAGCTAGTCCCTCTGGCGAGGGATCTCCTACAACTCCAACTATCACC 216
| ||||||||||||||| |||||||||||| | ||| ||||||||||||||||| |||
Sbjct 268 AACCCTCCACCTCCAGCGAGTCCCTCTGGCCA-GGA--ACCTACAACTCCAACTATGACC 324
Query 217 CCAGGCTTTTCTCTATCTCCGCCGTCTTCCTCAACATTATTATCAACGGGAGTTGTGGTC 276
||||||||||||||||| ||||||||| |||| | | |||||||||||||| |||||||
Sbjct 325 CCAGGCTTTTCTCTATCACCGCCGTCTCCCTC-A-A-GATTATCAACGGGAGCTGTGGTC 381
Query 277 GGGATCGCCATAGGAGGAGTTGCTGTGCTTGTTGTGGTGTTGACTTTGATTTGTTTT-CT 335
|||||| ||||||||||| | | | || || | |||||||||||||||| |||| ||
Sbjct 382 GGGATCTCCATAGGAGGA---G--GAG-TT-TT-T-GTGTTGACTTTGATTT-TTTTCCT 431
Query 336 TTGTAAGAAGAAACGACGAAGAGACGATGAAGCACTTCCGACTCCCATAGGCATACATCA 395
||||||||||||||||| |||||||||| ||||||||||| ||||||||||||| |||||
Sbjct 432 TTGTAAGAAGAAACGACCAAGAGACGATAAAGCACTTCCGGCTCCCATAGGCATCCATCA 491
Query 396 AAGAACTTTCACTTACGGGGAGCTCGCTA-ATGCCACCAATAAATTCTCTGAGGCCAATT 454
||| |||||||||||||||||||| |||| | ||||||||||||||||||||||||||||
Sbjct 492 AAGCACTTTCACTTACGGGGAGCTAGCTAGA-GCCACCAATAAATTCTCTGAGGCCAATT 550
Query 455 TTTTAGGAGAGGGCGGATTTGGATACGTATACAAAGGTATATTGACTAATGGAAAAGAAG 514
| ||||||||||| |||||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct 551 TGTTAGGAGAGGGTGGATTTGGATTCGTATACAAAGGTATATTGAATAATGGAAATGAAG 610
Query 515 TTGCAGTGAAACAGTTGAAAGCAGGGAGTGCTCAgggggggAGGGAGTTTCAGGCTGAGG 574
||||||| ||||||||||||| ||||||||||||||| | || ||||||||||||||||
Sbjct 611 TTGCAGTTAAACAGTTGAAAGTAGGGAGTGCTCAGGGTGAGAAAGAGTTTCAGGCTGAGG 670
Query 575 TTAATATTATTAGCCAAATTCACCACAGGCATTTGGTTTCTCTTGTTGGTTATTGCATCG 634
||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||||||
Sbjct 671 TTAATATTATTAGCCAAATTCACCATAGGAATTTGGTTTCCCTTGTCGGTTATTGCATCG 730
Query 635 CCGGTGCTCAAAGGTTGCTTGTCTATGAGTTTGTTCCCAACAACACTCTCGAGTTTCACC 694
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 CTGGTGCTCAAAGATTGCTTGTCTATGAGTTTGTTCCCAACAACACTCTCGAGTTTCACC 790
Query 695 TCCATGGGAAGGGACGGCCTACGATGGAATGGAGTTCAAGAATGAAGATTGCTGTTGGTT 754
|||||||||| ||||||||||||||||||||||||| |||| | ||||||||||| |||
Sbjct 791 TCCATGGGAAAGGACGGCCTACGATGGAATGGAGTTTAAGATTAAAGATTGCTGTCAGTT 850
Query 755 CTGCCAAAGGATTGTCTCATCTTCATGAAAATTACAATCCAAAAATCATCCACCGTGACA 814
|| |||||||||||||| ||||||||||||||| |||||| ||||||||||||||||| |
Sbjct 851 CTTCCAAAGGATTGTCTTATCTTCATGAAAATTGCAATCCTAAAATCATCCACCGTGATA 910
Query 815 TCAAGGCGGCAAACATATTGATTGATATCAAATTTGAAGCAAAAGTTGCTGATTTTGGTC 874
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 911 TCAAGGCGGCAAACATATTGATTGATTTCAAATTTGAAGCAAAGGTTGCTGATTTTGGTC 970
Query 875 TTGCCAAGATTGCTTTGGATACAAACACTCATGTATCTACACGCGTGATGGGAACCTTTG 934
| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 971 TCGCCAAGATTGCTTTGGATACAAACACTCATGTATCTACACGTGTTATGGGAACCTTTG 1030
Query 935 GGTATTTTGCTCCAGAATATGCTGCAAGTGGAAAGCTCACAGAAAAGTCTGATGTTTACT 994
||||||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1031 GGTATTTGGCTCCGGAATATGCTGCAAGTGGAAAGCTTACTGAAAAGTCTGATGTTTACT 1090
Query 995 CATTCGGCGTTGTACTTTTGGAGTTAATAACCGGACGTCGCCCTGTTGATGCAAACAAT 1053
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1091 CATTCGGCGTTGTACTTTTGGAGCTAATAACGGGACGTCGCCCTGTTGATGCAAACAAT 1149
> AT3G24550.1 | Symbols: ATPERK1, PERK1 | proline extensin-like
receptor kinase 1 | chr3:8960258-8963568 FORWARD LENGTH=2377
Length=2377
Score = 725 bits (392), Expect = 0.0
Identities = 578/667 (87%), Gaps = 16/667 (2%)
Strand=Plus/Plus
Query 395 AAAGAACTTTCACTTACGGGGAGCTCG-CTA-ATGCCACCAATAAATTCTCTGAGGCCAA 452
|||| ||||||||||| | |||| | | | | | || || ||| ||||||||||| ||
Sbjct 947 AAAGCACTTTCACTTATGAGGAG-TTGTCGAGA-GCTACTAATGGCTTCTCTGAGGCTAA 1004
Query 453 TTTTTTAGGAGAGGGCGGATTTGGATACGTATACAAAGGTATATTGACTAATGGAAAAGA 512
||| |||||| | || || ||||| || || | |||||||||||| ||| ||| |||||
Sbjct 1005 TTTGTTAGGACAAGGAGGGTTTGGTTATGTGCATAAAGGTATATTGCCTAGTGGGAAAGA 1064
Query 513 AGTTGCAGTGAAACAGTTGAAAGCAGGGAGTGCTCAgggggggAGGGAGTTTCAGGCTGA 572
|||||| ||||||||||||||||| || |||| |||||| | ||| ||||||||||||||
Sbjct 1065 AGTTGCTGTGAAACAGTTGAAAGCTGGTAGTGGTCAGGGAGAGAGAGAGTTTCAGGCTGA 1124
Query 573 GGTTAATATTATTAGCCA-AATTCACCACAGGCATTTGGTTTCTCTTGTTGGTTATTGCA 631
|||| | || ||||| || | |||| ||||||||||||||||||||| |||||||||| |
Sbjct 1125 GGTTGAGATCATTAG-CAGAGTTCATCACAGGCATTTGGTTTCTCTTATTGGTTATTGTA 1183
Query 632 TCGCCGGTGCTCAAAGGTTGCTTGTCTATGAGTTTGTTCCCAACAACACTCTCGAGTTTC 691
| ||||||| |||||| || |||||||||||||||||||| ||||||| ||| |||||||
Sbjct 1184 TGGCCGGTGTTCAAAGATTACTTGTCTATGAGTTTGTTCCAAACAACAATCTTGAGTTTC 1243
Query 692 ACCTCCATGGGAAGGGACGGCCTACGATGGAATGGAGTTCAAGAATGAAGATTGCTGTTG 751
|||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||| |||
Sbjct 1244 ACCTCCATGGTAAGGGACGGCCTACGATGGAATGGAGTACTAGATTGAAGATTGCTCTTG 1303
Query 752 GTTCTGCCAAAGGA-TTGTC-TCATCTTCATGAAAATTACAATCCAAAAATCATCCACCG 809
| ||||| |||||| || || | ||||||||||| ||| |||||| |||||||| |||||
Sbjct 1304 GATCTGCTAAAGGACTT-TCAT-ATCTTCATGAAGATTGCAATCCGAAAATCATTCACCG 1361
Query 810 TGACATCAAGGCGGCAAACATATTGATTGATATCAAATTTGAAGCAAAAGTTGCTGATTT 869
||| || |||||| ||||||||||||||||| ||||||||||||| || |||||||| ||
Sbjct 1362 TGATATTAAGGCGTCAAACATATTGATTGATTTCAAATTTGAAGCTAAGGTTGCTGACTT 1421
Query 870 TGGTCTTGCCAAGATTGCTT-TGGATACAAACACTCATGTATCTACACGCGTGATGGGAA 928
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1422 TGGTCTTGCCAAGATTGCTTCT-GATACAAACACTCATGTATCTACACGCGTGATGGGAA 1480
Query 929 CCTTTGGGTATTTTGCTCCAGAATATGCTGCAAGTGGAAAGCTCACAGAAAAGTCTGATG 988
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1481 CCTTTGGGTATTTGGCTCCGGAATATGCTGCAAGTGGAAAGCTCACAGAAAAGTCTGACG 1540
Query 989 TTTACTCATTCGGCGTTGTACTTTTGGAG-TTAATAACCGG-ACGTCGCCCTGTTGATGC 1046
||| |||||| ||||||||||||||||| ||| || | || | | ||||||||||||||
Sbjct 1541 TTTTCTCATTTGGCGTTGTACTTTTGGAACTTATTA-CTGGGAGG-CGCCCTGTTGATGC 1598
Query 1047 AAACAAT 1053
||||||
Sbjct 1599 GAACAAT 1605
> AT3G24400.1 | Symbols: | pseudogene, protein kinase family,
contains Pfam PF00069: Protein kinase domain; blastp match of
72% identity and 1.7e-148 P-value to GP|13397640|emb|CAC34703.1||AX088876
unnamed protein product {Brassica napus} | chr3:8858484-8861822
REVERSE LENGTH=3339
Length=3339
Score = 329 bits (178), Expect = 3e-89
Identities = 275/322 (85%), Gaps = 6/322 (2%)
Strand=Plus/Plus
Query 383 TAGGCATACATCAAAGAACTTTCACTTACGGGGAGCTCGCTA-ATGCCACCAATAAATTC 441
|||||||| ||||| | ||||||| ||||| |||||| ||| | ||||||||| ||||
Sbjct 1300 TAGGCATATATCAAGGCACTTTCAATTACGAGGAGCTATCTAGA-GCCACCAATGGATTC 1358
Query 442 TCTGAGGCCAATTTTTTAGGAGAGGGCGGATTT-GGATACGTATACAAAGGTATATTGAC 500
|||||||||||||| |||||| | ||||| ||| |||||||| | ||||||||| || ||
Sbjct 1359 TCTGAGGCCAATTTGTTAGGACAAGGCGG-TTTCGGATACGTGTTCAAAGGTATGTT-AC 1416
Query 501 -TAATGGAAAAGAAGTTGCAGTGAAACAGTTGAAAGCAGGGAGTGCTCAgggggggAGGG 559
|||||| ||||||||||| |||||||| ||||||| ||||||| |||| || | || |
Sbjct 1417 GTAATGGGAAAGAAGTTGCTGTGAAACAATTGAAAGAAGGGAGTTCTCAAGGAGAAAGAG 1476
Query 560 AGTTTCAGGCTGAGGTTAATATTATTAGCCAAATTCACCACAGGCATTTGGTTTCTCTTG 619
||||||| || |||||| || ||||||| | | || || || ||||||||| ||||||
Sbjct 1477 AGTTTCAAGCAGAGGTTGGGATCATTAGCCGAGTACATCATAGACATTTGGTTGCTCTTG 1536
Query 620 TTGGTTATTGCATCGCCGGTGCTCAAAGGTTGCTTGTCTATGAGTTTGTTCCCAACAACA 679
| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1537 TCGGTTATTGCATCGCCGATGCTCAAAGATTGCTTGTCTATGAGTTTGTTCCCAACAACA 1596
Query 680 CTCTCGAGTTTCACCTCCATGG 701
||||||||||||||||||||||
Sbjct 1597 CTCTCGAGTTTCACCTCCATGG 1618
Score = 147 bits (79), Expect = 4e-34
Identities = 83/85 (98%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 703 AAGGGACGGCCTACGATGGAATGGAGTTCAAGAATGAAGATTGCTGTTGGTTCTGCCAAA 762
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1712 AAGGGACGGCCTACGATGGAATGGAGTTCAAGATTGAAGATTGCTGTTGGTTCTGCCAAA 1771
Query 763 GGATTGTCTCATCTTCATGAAAATT 787
||||||||| |||||||||||||||
Sbjct 1772 GGATTGTCTTATCTTCATGAAAATT 1796
Score = 121 bits (65), Expect = 2e-26
Identities = 76/81 (94%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 859 GTTGCTGATTTTGGTCTTGCCAAGATTGCTT-TGGATACAAACACTCATGTATCTACACG 917
||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||
Sbjct 2081 GTTGCTGATTTTGGTCTTGCCAAGATTGCTTCTG-ATACAAATACTCATGTATCTACACG 2139
Query 918 CGTGATGGGAACCTTTGGGTA 938
||||||||||| ||||||||
Sbjct 2140 TGTGATGGGAACTTTTGGGTA 2160
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65260708500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5