BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905601

Length=306
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G70590.1 | Symbols:  | F-box family protein | chr1:26618321-...   167    6e-41


> AT1G70590.1 | Symbols:  | F-box family protein | chr1:26618321-26620388 
FORWARD LENGTH=1367
Length=1367

 Score =  167 bits (90),  Expect = 6e-41
 Identities = 153/181 (85%), Gaps = 14/181 (8%)
 Strand=Plus/Plus

Query  139   GAAGGGGCA-ATGCTGAAATCAGTACTTTACTTAGAACTCGCTGAACGTGGTGGCGAAGT  197
             ||||||| | |||||||| ||||| |||||||||||||| || |||||||||||||||| 
Sbjct  959   GAAGGGG-AGATGCTGAAGTCAGTGCTTTACTTAGAACTTGCCGAACGTGGTGGCGAAGC  1017

Query  198   AGCTGCTGCTCACGTCAAGGAAGTTATACACCAACAGCTTTCTGCAAC--TT-CTCGT--  252
             ||||||| ||| |||||| |||||| ||||||||||||||||||||||  ||  | ||  
Sbjct  1018  AGCTGCTACTCCCGTCAAAGAAGTTGTACACCAACAGCTTTCTGCAACTTTTGGTGGTCA  1077

Query  253   -G--GT----CATGTCATACACCAAGCCAATAACTGGCGTCCTCTACCAGCTACTCGCTG  305
              |  ||    |||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct  1078  GGCCGTACACCATGCCATACACCAAGCCAATAACTGGCGTCCTCTACCAGTTACTCGATG  1137

Query  306   A  306
             |
Sbjct  1138  A  1138



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14175505218


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5