BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905623

Length=300
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G24770.1 | Symbols: CLE41 | CLAVATA3/ESR-RELATED 41 | chr3:9...   449    5e-126


> AT3G24770.1 | Symbols: CLE41 | CLAVATA3/ESR-RELATED 41 | chr3:9046533-9047463 
FORWARD LENGTH=931
Length=931

 Score =  449 bits (243),  Expect = 5e-126
 Identities = 282/301 (94%), Gaps = 2/301 (1%)
 Strand=Plus/Plus

Query  1    ATGGCAACATCAAATGACCAAACCAATACCAAATCATCACAttctcatactcttctcctt  60
            ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct  247  ATGGCAACATCAAATGACCAAACCAATACTAAATCATCACATTCTCGTACTCTTCTCCTT  306

Query  61   ctcctcatcttcttatctctccttctcttcA-TAAGCCTTACAATCCCCATGACTCGTCC  119
            ||| ||||||||||||| ||||||||||||| | ||||||||||||||||||||||||| 
Sbjct  307  CTCTTCATCTTCTTATCCCTCCTTCTCTTCAGT-AGCCTTACAATCCCCATGACTCGTCA  365

Query  120  TCAGTTCACATCTACGGTTGCTCCCTTCAAGAGAGTTCTTCTTGAACCTTCGGTTCCAGC  179
            ||||| |||||||| |||||||||||||||||| ||||| || ||| |||| ||||||||
Sbjct  366  TCAGTCCACATCTATGGTTGCTCCCTTCAAGAGGGTTCTCCTCGAATCTTCAGTTCCAGC  425

Query  180  TTCATCAACAATGGATCTACATCCAAAGGCTCGCGCACGACACAACCGCACTTCTAGAAG  239
            |||||||||||||||||||| |||||||||| || |||||| || |||||||||||||||
Sbjct  426  TTCATCAACAATGGATCTACGTCCAAAGGCTAGCACACGACGCAGCCGCACTTCTAGAAG  485

Query  240  GAGAGAGTTTGGAAATGATGCTCATGAGGTTCCTAGTGGTCCAAACCCTATTTCCAACTA  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  486  GAGAGAGTTTGGAAATGATGCTCATGAGGTTCCTAGTGGTCCAAACCCTATTTCCAACTA  545

Query  300  G  300
            |
Sbjct  546  G  546



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13873898724


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5