BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905626
Length=2157
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24780.1 | Symbols: | Uncharacterised conserved protein UCP... 1991 0.0
AT5G13210.1 | Symbols: | Uncharacterised conserved protein UCP... 1066 0.0
> AT3G24780.1 | Symbols: | Uncharacterised conserved protein UCP015417,
vWA | chr3:9049446-9051593 FORWARD LENGTH=2148
Length=2148
Score = 1991 bits (1078), Expect = 0.0
Identities = 1429/1594 (90%), Gaps = 42/1594 (3%)
Strand=Plus/Plus
Query 288 ACCTGTAAGACCGCGAAAAGTTGATCCATATAAATCTTCACGTCCGATGGGCTACAGC-G 346
|||||| |||| ||||| ||| ||| | | |||||||||| | |||||||||||| | |
Sbjct 282 ACCTGTTAGACGGCGAAGAGTAGATTTAAACAAATCTTCACCTGCGATGGGCTACA-CTG 340
Query 347 AGAATGGATCCGCCACGTACCTCTCCTCAGGCAACCCCTGCCTCGACTTCTTCTTTCACA 406
||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 341 AGAATAGATCCGCCACCTACCTCTCCTCAGGTAACCCCTGCCTCGACTTCTTCTTTCACA 400
Query 407 TTGTTCCTTCAACGCCAAAGTTATCTCTAGAGCAGCGGCTACAGGAGGCTTGGGACCATG 466
|||||||||| ||||| ||| |||||| |||||||||||| ||||||||||||||||||
Sbjct 401 TTGTTCCTTCCACGCCCAAGAAATCTCTGGAGCAGCGGCTAGAGGAGGCTTGGGACCATG 460
Query 467 ATGCCTTAACCACTCTCAAGCTTATCTGTAACCTTCGTGGAGTCCGAGGCACTGGAAAAT 526
|| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 461 ATTCTTTAACCACTCTCAAGCTTATCTGTAACCTTCGTGGAGTCCGTGGCACTGGAAAAT 520
Query 527 CTGACAAGGAAGGGTTTTACACGGCGGCGTTGTGGCTCCATGGTCACCATCCGAAAACCC 586
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 521 CTGACAAGGAAGGGTTTTACACGGCGGCGTTGTGGCTCCATGGTCGCCATCCCAAAACCC 580
Query 587 TAGCTAGTAACCTCGAGTC-CATCTCCAAGTTTGGCTATTTTAAAGATTTTCCGGAGATT 645
||||| ||||||||||||| | ||||||| ||||||||||||||||||||||||||||||
Sbjct 581 TAGCTTGTAACCTCGAGTCTC-TCTCCAAATTTGGCTATTTTAAAGATTTTCCGGAGATT 639
Query 646 CTTTACCGGATTCTACAAGGATCTGAAATCCGCAGTATCCAGAAATCGGAATGGTACAAG 705
||||||||||||||||||||| |||||||||||||||| |||||| || || ||||| |
Sbjct 640 CTTTACCGGATTCTACAAGGACCTGAAATCCGCAGTATACAGAAAACGCAAAGGTACGAT 699
Query 706 ACAATAGCCGCAGCAAT-TCTTCGTAGAAGATCCAAATTCTCCAGACGCGGTCGTGGTGT 764
|||||||||||||| || ||| |||||||||||| ||||| ||| | ||||||||| |
Sbjct 700 ACAATAGCCGCAGC-ATCTCTACGTAGAAGATCCCGTTTCTCTAGAGGTGGTCGTGGT-T 757
Query 765 TGGCCGTGGTTTTGGTCTTGGTCATGGAAGGGGTCGCAGAATGCGTGGTCTAAAAAGGCC 824
| | |||| ||||| || | | |||||| | | | | | | |||||||| |
Sbjct 758 TTG--GTGG---TGGTC---GT-A--GTAGGGGT--C-G--T-CATTTTTTAAAAAGGTC 800
Query 825 GGCAGCCACGAGGTCTCTGAGGGTAGCGAACGCAAAGAGAAAGGACCAAGAGGAGAAAGC 884
||||||||||||| || |||||||||||||| |||| ||| ||||||||||||||||
Sbjct 801 GGCAGCCACGAGGGAGCTAAGGGTAGCGAACGCGGAGAGGAAGAACCAAGAGGAGAAAGC 860
Query 885 CAAAGCAAGCTTGGAGCGCAAGCAAAAGAAGGTTTCAATGG-GTAAGGCCGCATTTAC-A 942
|| |||||||||| ||||||||||||||||||||||||||| | ||||| |||| ||| |
Sbjct 861 CAGAGCAAGCTTGAAGCGCAAGCAAAAGAAGGTTTCAATGGCG-AAGGCTGCATCTACAA 919
Query 943 AGATATACTAACGATCCAGACTATAGGTTTCTCCACGAACGTGTCTCTGATCTATTCGCA 1002
|| ||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 920 AG-TATTCTAACGATCCAAACTATAGGTTTCTCCACGAACGTGTCTCTGAACTATTCGCA 978
Query 1003 AATCAGCTAAGGAGAGACCTTGAGTTTTTAAAATCAC-GCCAACCAAAAC-AAATCTCTT 1060
||||| |||| |||||||||||||||||| | ||| | ||||||| |||| ||||||||
Sbjct 979 AATCAACTAAAGAGAGACCTTGAGTTTTTGACATC-CGGCCAACC-AAACAAAATCTCTC 1036
Query 1061 TAGCGGCTAAATGGTGTCCCTCGCTTGATTCTTCGTTCGACAAAGCAACTCTTCTTTGCG 1120
||||||||||||||||||| || |||||||||||||||||||||||||||||| | ||||
Sbjct 1037 TAGCGGCTAAATGGTGTCCATCCCTTGATTCTTCGTTCGACAAAGCAACTCTTATCTGCG 1096
Query 1121 AGAGTATTGCTAGGAAGATCTTTCCCAAAGAATCATTCCCGGAATACGAAGGCGTGGAAG 1180
|||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1097 AGAGCATAGCTAGGAAGATCTTTCCCCAAGAATCATTCCCGGAATACGAAGGCGTGGAAG 1156
Query 1181 AAGCTCACTATGCGTACAGAGTTCGTGATCGGCTAAGGAAACAAGTTCTTGTTCCCCTTC 1240
| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| || |
Sbjct 1157 ATGCTCACTATGCGTACAGAGTTCGTGACCGGCTAAGGAAACAAGTCCTTGTTCCTCTCC 1216
Query 1241 GG-AGAACCCTGCAACTCCCTGAAGTATACATGGGAGCTAGAGCTTGGCGATTTCTCCCT 1299
|| || || |||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1217 GGAAG-ACTCTGCAACTCCCTGAAGTATACATGGGAGCTAGAGCTTGGCAATCTCTCCCT 1275
Query 1300 TACAATCGTGTTCCATCAGTGGCAATGGCGTCCTATAAGGAGATTTTCTTGTACCGTGAC 1359
|| || |||||| |||||||||| ||| ||| || |||||| |||||||||| ||||||
Sbjct 1276 TATAACCGTGTTGCATCAGTGGCGATGAAGTCATACAAGGAGGTTTTCTTGTATCGTGAC 1335
Query 1360 GCAGAGAGGTTTCAACAATATCTTAACGATGCGAAGACGGGGAAAACGAAGATAGCCGCC 1419
| | |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1336 GAAAAGAGGTTTCAGCAATATCTTAACGATGCCAAGACGGGGAAAACGAAGATAGCCGCC 1395
Query 1420 GGTGCAGTGCTACCTCACGAGATAATAAAAAATTTAGACGGTGGAGACGGTGGAC-AAGT 1478
||||| ||| |||||||||||||||| | | | ||| |||| ||||||||||| | ||||
Sbjct 1396 GGTGCTGTGTTACCTCACGAGATAATCAGAGAGTTAAACGGCGGAGACGGTGG-CAAAGT 1454
Query 1479 TGCTGAGCTACAATGGAAACGAATGGTTGATGACCTTAAAGAGAAAGGTTCTTTGACCAA 1538
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1455 CGCTGAGCTGCAATGGAAACGAATGGTTGACGACCTTAAAGAGAAAGGTTCTTTGACCAA 1514
Query 1539 CTGCATGGCTATCTGTGACGTTTCGGGGTCTATGAGTGGTGAGCCAATGGAGGTTTCAGT 1598
|||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1515 CTGCATGGCTATATGTGACGTTTCGGGATCTATGAATGGTGAGCCAATGGAGGTTTCAGT 1574
Query 1599 CGCGCTTGGTTTGTTAGTCTCTGAGCTATCAGAAGAGCCATGGAAAGGAAAGCTTATAAC 1658
||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1575 CGCCCTTGGATTGCTAGTCTCTGAGCTATCAGAAGAGCCATGGAAAGGAAAGCTTATAAC 1634
Query 1659 ATTCAG-CAAAGACCCTGAACTGCATTTGGTGAAAGGAGACGATTTGAGATCAAAAACA- 1716
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1635 ATTCAGACAAAG-TCCTGAACTGCATTTGGTGAAAGGAGACGATTTGAGATCAAAAACAG 1693
Query 1717 AGTTTCGTGAAGAGAATGCAATGGGATATGAACACTGATTTTCAGAAAGTGTTTGATTTG 1776
||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1694 AGTTT-GTGGAGAGCATGCAATGGGATATGAACACTGATTTTCAGAAAGTGTTTGATTTG 1752
Query 1777 ATTCTTAAAGTGGCCGTAGAA-GCCAAGCTGAAGCCGGAAGAGATGATCAAGACGTTGTT 1835
||||||||||||||||| ||| || ||||| |||||| |||| |||||||||| | ||||
Sbjct 1753 ATTCTTAAAGTGGCCGTGGAAAGC-AAGCTTAAGCCGCAAGACATGATCAAGAGGGTGTT 1811
Query 1836 TGTGTTCAGTGATATGGAGTTTGATGAAGCGTCG 1869
|||||||||||| |||||||||||||||||||||
Sbjct 1812 TGTGTTCAGTGACATGGAGTTTGATGAAGCGTCG 1845
Score = 239 bits (129), Expect = 1e-61
Identities = 151/162 (93%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 139 GTCAACACTTCGCCTCCGACGGGACAGACCGAGGAAAGACCCCCCACGTACCTCGCCGCT 198
||||| ||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 79 GTCAATACTTCACCTCCGATGGGACAGACCGAGGAAAGACCCCACACGTACCTCGCCGCT 138
Query 199 CTCCTCAAAAACATCAACACTTGTCGTCCCAGCGTCCCAAAGGTCTCAAACGTCAGGAAA 258
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 139 CTCCTCAAGAACATCAACACTTGTCGTCCCAGCGTCCCAAAGGTCTCAAACATCAAGAAA 198
Query 259 TCAACTAAAGTCAACGTCAAACCTGTCAAACCTGTAAGACCG 300
|||||||||||||||||||| ||||| | |||||| ||||||
Sbjct 199 TCAACTAAAGTCAACGTCAATCCTGTTAGACCTGTTAGACCG 240
Score = 189 bits (102), Expect = 1e-46
Identities = 110/114 (96%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 1902 AGAGAAAGGGTACGGAGAAGCTGTGCCGGAGATTGTGTTTTGGAACCTGAGGGCTTCGAG 1961
|||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1992 AGAGAAAGGGTACGGAGAGGCTGTGCCGGAGATTGTGTTTTGGAATCTGAGGGATTCGAG 2051
Query 1962 GTCAACGCCTGTGCTTGGAAACAAGAAAGGAGTGGCTTTGTTAAGTGGGTTTTC 2015
|||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2052 GTCAACGCCTGTGCTTGGAAACAAGAAAGGAGTGGCTTTGGTAAGTGGGTTTTC 2105
> AT5G13210.1 | Symbols: | Uncharacterised conserved protein UCP015417,
vWA | chr5:4214504-4216686 FORWARD LENGTH=2183
Length=2183
Score = 1066 bits (577), Expect = 0.0
Identities = 898/1052 (85%), Gaps = 26/1052 (2%)
Strand=Plus/Plus
Query 832 ACGAGGTC-TCTGAGGGTAGCGAACGCAAAGAGAAAGGACCAAGAGGAGAAAGCCAAAGC 890
|||||| | | |||| ||||| ||||| |||| ||| | |||| |||||||||| |||
Sbjct 715 ACGAGGGCGT-TGAGAGTAGCCAACGCTGAGAGGAAGAATCAAGCCGAGAAAGCCAGAGC 773
Query 891 AAGCTTGGAGCGCAAGCAAAAGAAGGTTTCAATGGGTAAGGCCGCATTTACAAGATATAC 950
||||||||| || ||| ||||||||||||| ||||| |||| ||| |||||||||||| |
Sbjct 774 AAGCTTGGATCGGAAGAAAAAGAAGGTTTCGATGGGGAAGGACGCGTTTACAAGATATTC 833
Query 951 TAACGATCCAGACTATAGGTTTCTCCACGAACGTGTCTCTGATCTATTCGCAAATCAGCT 1010
| ||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||
Sbjct 834 TTGCGATCCAGACTATAGATATCTCCACGAACGCGTCTCTGATCTATTCGCAAATCAGCT 893
Query 1011 AAGGAGAGACCTTGAGTTTTTAAAATCACG-CCAACCAAAAC-AAATCTCT-TTAGCGGC 1067
|| || ||| ||||||||||| | ||| | | |||| |||| |||||||| || || ||
Sbjct 894 AAAGAAAGATCTTGAGTTTTTGACATC-GGACAAACC-AAACGAAATCTCTCTT-GCTGC 950
Query 1068 TAAATGGTGTCCCTCGCTTGATTCTTCGTTCGACAAAGCAACTCTTCTTTGCGAGAGTAT 1127
|||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||| ||
Sbjct 951 TAAATGGTGTCCATCGCTTGACTCTTCGTTTGACAAAGCAACTCTTCTCTGCGAGAGCAT 1010
Query 1128 TGCTAGGAAGATCTTT-CCCAAAGAATCATTCCCGGAATACGAAGGCGTGGAAGAAGCTC 1186
|||||||||||||||| | | |||||||||||| |||||||||||||| | ||||||||
Sbjct 1011 TGCTAGGAAGATCTTTACTC-GAGAATCATTCCCTGAATACGAAGGCGTTGTAGAAGCTC 1069
Query 1187 ACTATGCGTACAGAGTTCGTGATCGGCTAAGGAAACAAGTTCTTGTTCCCCTTCGGAGAA 1246
||||||| ||||||||||||||||||||||||||| | ||||||||||| || || | ||
Sbjct 1070 ACTATGCATACAGAGTTCGTGATCGGCTAAGGAAAGATGTTCTTGTTCCTCTGCGTAAAA 1129
Query 1247 CCCTGCAACTCCCTGAAGTATACATGGGAGCTAG-AGCTTGGCGAT-TTCTCCCTTACAA 1304
| |||||||| ||||||||||| |||||||| || | | ||| ||| |||| || |||||
Sbjct 1130 CTCTGCAACTGCCTGAAGTATATATGGGAGCGAGAAAC-TGG-GATATTCTTCCGTACAA 1187
Query 1305 TCGTGTTCCATCAGTGGCAATGGCGTCCTATAAGGAGATTTTCTTGTACCGTGACGCAGA 1364
||||| |||||||||| ||| ||| || |||||||| |||||| | | ||||||||
Sbjct 1188 CCGTGTAGCATCAGTGGCGATGAAGTCGTACAAGGAGATATTCTTGAAGCACGACGCAGA 1247
Query 1365 GAGGTTTCAACAATATCTTAACGATGCGAAGACGGGGAAAACGAAGATAGCCGCCGGTGC 1424
||||||||| ||||||||| ||||||| ||| |||||||||| ||| |||| || |||||
Sbjct 1248 GAGGTTTCAGCAATATCTTGACGATGCAAAGGCGGGGAAAACCAAGGTAGCTGCTGGTGC 1307
Query 1425 AGTGCTACCTCACGAGATAATAAAAAATTTAGACGGTGGAGACGGTGGACAAGTTGCTGA 1484
||| | ||||| |||||||| | | | |||||||||||||||||||||||||| || ||
Sbjct 1308 TGTGTTGCCTCATGAGATAATCAGAGAGTTAGACGGTGGAGACGGTGGACAAGTAGCAGA 1367
Query 1485 GCTACAATGGAA-ACGAATGGTTGATGACCTTAAAGAGAAAGGTTCTTTGACCAACTGCA 1543
||| |||||||| | ||| ||| ||||| | ||||||||||||||||||| || || |
Sbjct 1368 GCTGCAATGGAAGA-GAACGGTAGATGATATGAAAGAGAAAGGTTCTTTGAGGAATTGTA 1426
Query 1544 TGGCTATCTGTGACGTTTCGGGGTCTATGAGTGGTGAGCCAATGGAGGTTTCAGTCGCGC 1603
| ||| ||||||||||||| |||||||||| |||||| ||||||||||||| || | ||
Sbjct 1427 TAGCTGTCTGTGACGTTTCAGGGTCTATGAATGGTGAACCAATGGAGGTTTGTGT-G-GC 1484
Query 1604 -TT-GGTTTGTTAGTCTCTGAGCTATCAGAAGAGCCATGGAAAGGAAAGCTTATAACATT 1661
|| ||| || |||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 1485 TTTGGGTCTGCTAGTCTCTGAGCTATCTGAAGAGCCATGGAAAGGAAAGCTAATAACTTT 1544
Query 1662 CAG-CAAAGACCCTGAACTGCATTTGGTGAAAGGAGACGATTTGAGA-TCAAAAACA-AG 1718
||| |||| | || || ||||||||||||||||||||||| || | ||||||||| ||
Sbjct 1545 CAGCCAAA-ATCCGGAGTTGCATTTGGTGAAAGGAGACGATCTG-TACTCAAAAACAGAG 1602
Query 1719 TTTCGTGAAGAGAATGCAATGGGATATGAACACTGATTTTCAGAAAGTGTTTGATTTGAT 1778
||| || || | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1603 TTT-GTTAAAAAAATGCAATGGGGTATGAACACTGATTTTCAGAAAGTGTTTGATTTGAT 1661
Query 1779 TCTTAAAGTGGCCGTAGAAGCCAAGCTGAAGCCGGAAGAGATGATCAAGACGTTGTTTGT 1838
|||| |||||||||| ||| |||||||||||||||||||||||||||| | |||||||
Sbjct 1662 TCTTGGAGTGGCCGTACAAGAGAAGCTGAAGCCGGAAGAGATGATCAAGAGGGTGTTTGT 1721
Query 1839 GTTCAGTGATATGGAGTTTGATGAAGCGTCGT 1870
|||||||||||||||||||||| ||||| |||
Sbjct 1722 GTTCAGTGATATGGAGTTTGATCAAGCGGCGT 1753
Score = 420 bits (227), Expect = 3e-116
Identities = 333/383 (87%), Gaps = 12/383 (3%)
Strand=Plus/Plus
Query 330 TCCGATGGGCTACAGCGAGAATGGATCCGCCACGTACCTCTCCTCAGGCAACCCCTGCCT 389
|||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 219 TCCGATGGGCTACACCGAGAATAAATCCGCCACTTACCTCTCCTCAGGCAACCCCTGCCT 278
Query 390 CGACTTCTTCTTTCACATTGTTCCTT-CAACGCC-AAAGTTATCTCTAGAGCAGCGGCTA 447
|||||||||||| ||| ||||||| || |||| ||| ||||| |||||| || ||
Sbjct 279 CGACTTCTTCTTCCACGTTGTTCCAAGCA-CGCCTAAACAC-TCTCTCGAGCAGTGGTTA 336
Query 448 CA-GGAGGCTTGGGACCATGATGCCTTAACCACTCTCAAGCTTATCTGTAACCTTCGTGG 506
|| || | |||||||||| || ||||| ||||| ||||||||||||||||| ||||||||
Sbjct 337 CAAGGTG-CTTGGGACCACGACGCCTTGACCACACTCAAGCTTATCTGTAATCTTCGTGG 395
Query 507 AGTCCGAGGCACTGGAAAATCTGACAAGGAAGGGTTTTACACGGCGGCGTTGTGGCTCCA 566
|||||| ||||| |||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 396 AGTCCGTGGCACCGGAAAATCCGACAAGGAAGGGTTTTACACGGCGGCTTTATGGCTCCA 455
Query 567 TGGTCACCATCCGAAAACCCTAGCTAGTAACCTCGAGTC-CAT-CTCCAAGTTTGGCTAT 624
||||| ||||| |||||||||||| ||||||||||||| | | ||| || ||||| ||
Sbjct 456 TGGTCGTCATCCCAAAACCCTAGCTTGTAACCTCGAGTCTCTTTCTC-AA-TTTGGATAC 513
Query 625 TTTAAAGATTTTCCGGAGATTCTTTACCGGATTCTACAAGGATCTGAAATCCGCA-GTAT 683
|||||||||||||| ||| |||||||||||||||||||||||||||||||||| | | ||
Sbjct 514 TTTAAAGATTTTCCAGAGCTTCTTTACCGGATTCTACAAGGATCTGAAATCCGGAAG-AT 572
Query 684 CCAGAAATCGGAATGGTACAAGA 706
||||||||| ||| ||| |||||
Sbjct 573 CCAGAAATCAGAAAGGTTCAAGA 595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106977361395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5