BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905670
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60120.2 | Symbols: TOE2 | target of early activation tagged... 654 0.0
> AT5G60120.2 | Symbols: TOE2 | target of early activation tagged
(EAT) 2 | chr5:24207689-24211743 FORWARD LENGTH=2297
Length=2297
Score = 654 bits (354), Expect = 0.0
Identities = 505/572 (88%), Gaps = 34/572 (6%)
Strand=Plus/Plus
Query 420 GAGTTCGCAGTATAGAGGCGTCACTTTCTATCGGAGGACAGGGAGATGGGAATCGCATAT 479
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 935 GAGTTCTCAGTATAGAGGCGTCACTTTCTATCGGAGGACAGGCAGATGGGAATCGCATAT 994
Query 480 CTTTAACTTTG-TG-AATCCA----A--TAGGTGGGTTTGATACTGCCCATGCTGCAGCT 531
|| | ||| | || | | | ||||||| ||||||||||||||||||||||||
Sbjct 995 CTGGGA--TTGCGGTAAACAAGTTTATTTAGGTGGATTTGATACTGCCCATGCTGCAGCT 1052
Query 532 ---GCGTACGATCGAGCTGCTGTCAAGTTCCGGGGTCTGGAGGCTGACATCAATTTCATC 588
||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |
Sbjct 1053 AGGGCGTATGATCGAGCTGCTGTCAAATTCCGGGGTCTGGAAGCTGACATCAATTTCGTT 1112
Query 589 ATCAGCGATTATGAAGAAGATCTCAAGCAGATGGCGAATCTTTCCAAAGAGGAAGTTGTG 648
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1113 ATTGGCGATTATGAAGAGGATCTCAAGCAGATGGCGAATCTTTCCAAAGAGGAAGTTGTG 1172
Query 649 CAAGTACTTCGGCGACAGAGCTCTGGTTTCTCAAGGAATAATTCAAGATATCAAGGAGTT 708
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1173 CAAGTACTTCGGCGACAGAGCTCTGGTTTCTCAAGGAATAATTCTAGATATCAAGGAGTT 1232
Query 709 GCTTTGCAAAAGATTGGCGGGTGGGGAGCTCAAATGGAGCAGTTTCATGGAAAC--GC-T 765
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 1233 GCTTTGCAAAAGATTGGCGGGTGGGGAGCTCAAATGGAGCAGCTTCATGGAAACATGGGT 1292
Query 766 TGTGACAAGGCAGCCATACAATGGAATGGAAGGGAAGCTGCTTC-TTCAATTGAGCCTCA 824
||||||||||||||| |||||||||| ||||||||||||||||| || ||||||||||||
Sbjct 1293 TGTGACAAGGCAGCCGTACAATGGAAGGGAAGGGAAGCTGCTTCCTT-AATTGAGCCTCA 1351
Query 825 TGCATCCTGGATGATTCCCGAGGCAGGTAATCTATTGTTAAGCTCGACCTCAACTTGGGA 884
||||||| | |||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1352 TGCATCCCGAATGATTCCCGAGGCAGCTAAT-----GTTAAGCTCGACCTCAACTTGGGA 1406
Query 885 AG-TG------A--A--AGATGGTCCAAAGCAAAAAGATAGGGCTCTCCGGCTTCACCAT 933
| | | | ||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1407 ATCTCTCTTTCACTAGGAGATGGTCCGAAGCAAAAAGATAGGGCCCTCCGGCTTCACCAT 1466
Query 934 GTCTCTAACAGTACCGTTTGTGGAAGGAACAC 965
||| |||||| | |||| ||||||||||||||
Sbjct 1467 GTCCCTAACAATTCCGTATGTGGAAGGAACAC 1498
Score = 588 bits (318), Expect = 4e-167
Identities = 401/438 (92%), Gaps = 18/438 (4%)
Strand=Plus/Plus
Query 1 ATGCTAGATCTCAATCTCGACGTCGACTCGGCCGAGTCTACTCAGAACGAACGAGATTCG 60
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 465 ATGCTGGATCTCAATCTCGACGTCGACTCGACCGAGTCTACTCAGAACGAACGAGATTCG 524
Query 61 ATTACTGTTAAAGGGGTTTCTTTGAATCAGATGGATGAATCAGTGACGTCGAACTCTTCT 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 525 ATTACTGTTAAAGGGGTTTCTTTGAATCAGATGGATGAATCGGTGACGTCGAACTCTTCT 584
Query 121 GCTGTTAATGCTGAGGCTTCTAGCTGCATAGATGGTGAAGATGAGTTGTGCTCTATACGA 180
| |||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 585 GTTGTTAATGCTGAAGCTTCTAGCTGTATAGATGGTGAAGATGAGTTGTGCTCTACACGA 644
Query 181 ACCGTCAAGTTTCAATTTGAGATACTGAAAGGAGGAG-AG--GAAGA---------TGAT 228
|| |||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 645 ACGGTCAAGTTTCAATTTGAGATACTGAAAGGAGGAGGAGAAGAAGAAGAAGAAGATGAT 704
Query 229 GATGAAAGAAGTGCTGTGATGA---CTAAGGAGTTTTTTCCTGTTGCCAAAGGCATGGAT 285
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
Sbjct 705 GATGAAAGAAGTGCTGTGATGATGACTAAGGAGTTTTTTCCTGTTGCTAAAGGCATGAAC 764
Query 286 TTTATGGATTCGAGCGCACAAAGTTCCAGGAGCACCGTTGATATTTCCTTCCAGAGAGGG 345
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||
Sbjct 765 TTTATGGATTCGAGCGCTCAAAGTTCAAGGAGCACCGTTGATATTTCCTTCCAGAGGGGG 824
Query 346 AAACAAGGCGGAGACTTTATCGGCAGTGGAAGCGGTGG---CGATGCTTCACGGGTGATG 402
|||||||| ||||||||||| || || || |||||||| |||||||||||||||||||
Sbjct 825 AAACAAGGTGGAGACTTTATAGGTAGCGGGAGCGGTGGTGGCGATGCTTCACGGGTGATG 884
Query 403 CAGCCACCATCACAGCCG 420
||||||||||||||||||
Sbjct 885 CAGCCACCATCACAGCCG 902
Score = 195 bits (105), Expect = 1e-48
Identities = 111/114 (97%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 970 ATGGAGACCCACATGGCTGCGGCGGCATGTGATACGCCTTTCAATTTCTTGAAGAGGGGT 1029
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1569 ATGGAGAACCACATGGCTGCAGCGGCATGTGATACGCCTTTCAATTTCTTGAAGAGGGGT 1628
Query 1030 TCAGACCATCTTACTAACCGGCATGCCCTTCCTTCTGCGTTCTTTTCACCCATG 1083
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TCAGACCATCTTAATAACCGGCATGCCCTTCCTTCTGCGTTCTTTTCACCCATG 1682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53061976065
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5