BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905698
Length=3168
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25430.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 2222 0.0
AT3G25440.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain ... 1869 0.0
> AT3G25430.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr3:9221186-9223770 FORWARD
LENGTH=1945
Length=1945
Score = 2222 bits (1203), Expect = 0.0
Identities = 1341/1409 (95%), Gaps = 4/1409 (0%)
Strand=Plus/Plus
Query 1 ATGCAAAGACGCTTCCTTTCGTCAATCTCCGCCACCGCCGGCAATACTAAAACCGTAAAT 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 19 ATGCAAAGGCGCTTCCTTTCGTCAATCTCCGCCACCGCCGGCAATACTAAAACCCTAAAT 78
Query 61 CAAGGAAGATGGAGTGTGAAGCAAGTGAAAAAATCAAACTTTCATGTAACCCTCGACGAG 120
||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 79 CAAGGAAGATGGAGTGTAAAGCAAGTGAAAAAATCCAACTTTCATGTAACTCTCGACGAG 138
Query 121 ATTCGAACTTCCATCGATTCATCAGACTTCATAGCTCTCTCACTACAAAACACCGGCTCA 180
||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 139 ATTCGTACTTCCATCGATTCATCAGACTTCATAGCTCTCTCATTACAAAACACTGGCTCA 198
Query 181 TACGCCGCCGCGTGGCACCGTGTCTCCGCCATTGACACGCCGCAAACAAGCTACTTTAAA 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 199 TACGCCGCCGCGTGGCACCGTGTCTCCGCCATTGACACGCCGCAAACTAGCTACTTAAAA 258
Query 241 GCTAAATACGCCGCCGAACGTTACCAGATTCTCCAGTTCGCTCTCTGCCCTTTCTCTCTT 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 GCTAAATACGCAGCCGAACGTTACCAGATTCTCCAGTTCGCTCTCTGCCCTTTCTCTCTT 318
Query 301 CACGGCTCTAAACTCACTGTTCACCCATATAACTTCCATTTGTTTCCTCGTGATGAATTG 360
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 319 CAAGGCTCTAAACTCACTGTTCATCCATATAACTTTCATTTGTTTCCTCGTGATGAATTG 378
Query 361 AAGTGTGGGATGCCTTCTTATAGCTTCTCTTGTCAAGCTTCACGTTTAACAGCTATGGCT 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 AAGTGTGGTATGCCTTCTTATAGCTTCTCTTGTCAAGCTTCACGTTTAACAGCTATGGCT 438
Query 421 AGAGAAGGATTTGACTTCAACACTTGTATCTATGAAGGAATTTCATACTTATCTAGAGCA 480
|||||||||||||| ||||||| ||| |||||||||||||| ||||||||||||||||||
Sbjct 439 AGAGAAGGATTTGATTTCAACATTTGCATCTATGAAGGAATCTCATACTTATCTAGAGCA 498
Query 481 CAAGAGTCTGCGTCGAAGTTTCTCTCCGGGAATCCGATATTAGCTGAT-CATATCAGTGT 539
||||||||||| ||||||||||| |||| ||||||||||||||||||| | | | | |||
Sbjct 499 CAAGAGTCTGCATCGAAGTTTCTTTCCGAGAATCCGATATTAGCTGATTC-TGTTACTGT 557
Query 540 ATCTTCTTCTCCAGCTACTGTAGCTGATACCGTCTTTGTTGGGAGGATTAGGTCACGTGT 599
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 558 ATCTTCTTCTCCAGCTACTGTAGCTGATACTGTCTTTGTTGGAAGGATTAGGTCACGTGT 617
Query 600 CAAGAATTGGAGACAATCTTGTATAGACTCGGGTTCGAAGACAGGAGATGATGATTTGGT 659
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 618 CAAGAATTGGAGACAGTCTTGTATAGACTCGGGTTCAAAGACAGGAGATGATGATTTGGT 677
Query 660 GAGCTCTTTGAGAAGACTGGTGTTGGGGAGTGAGCAGTATGGTTCAAGGCTGTGTTTGAC 719
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 678 GAGCTCTTTGAGAAGGCTGGTGTTGGGGAGTGAGCAGTATGGTTCAAGGCTGTGTTTGAC 737
Query 720 GATTGATGTTTGCAGTGAGCGTCAAGTGCAACTTATCCTAGAGATGTTGACTGAGTTCTC 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 738 TATTGATGTTTGCAGTGAGCGTCAAGTGCAACTTATCCTAGAGATGTTGACTGAGTTCTC 797
Query 780 CGATGATGTTGTCCCTCTACTCGTCGCTTCTAAGAGCAGAGGAACACAAGCAGTTCGTAC 839
|||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||
Sbjct 798 TGATGATGTTGTCCCTCTACTGGTCGCTTCAAAGAGCAGAGGAACACAAGCTGTTCGTAC 857
Query 840 GGTCTTTATGAGTTCGAAGGAGGACAAGGATCTTTTTAAGAGAGAGCTTCAAGATCTTGA 899
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 858 TGTCTTTATGAGTTCGAAGGAGGACAAGGATCTTTTTAAGAGAGAGCTTAAAGATCTTGA 917
Query 900 AAACGAAGAAAACAGGCGCGTTCGTGGCTTTCGGGAAGTGGTCGATTTGATTTCTTCTTC 959
||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 918 AAAGGAAGAAAACAGGCGAGTTCGTGGCTTTCGGGAAGTGGTCGATTTTATTTCTTCTTC 977
Query 960 ACAGAAACCTGTCGTTTCCCAGAATTATCTTAGCGACTTTACTTCCATTCATGCCAAATT 1019
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 978 ACAGAAACCTGTCGTTTCCCAGAATTATCTTAGCGATTTTACTTCCATTCATGCTAAATT 1037
Query 1020 CCTGGGTCCTCTACCTTCAAATTTGGATGACTTCAGCAGTTCACTGAGCTCAGCTTTTCC 1079
||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1038 CCTTGGTCCTCTACCTTCAAATGTGGATGACTTCAGCAGTTCACTGAGCTCAGCATTTCC 1097
Query 1080 CAATGTTGTGGATCTGAGTCAGTTCATGaaaaaaaTTAGTCCCTTAAGCAATATAAGCAA 1139
||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||| ||
Sbjct 1098 CAATGTTGTGGATCTCAGTCAGTTCATGAAAGAAATTAGTCCCTTAAGTAATATAAGTAA 1157
Query 1140 TCTACCTGCAGCTATGTCCTCCTTGAATCGGTTCTTTGTACCTGTGGATGTGGAAGTGGC 1199
|||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| ||
Sbjct 1158 TCTACCTGCAGCTATGTCCTCCTTGAATAGGTTCTTTGCACCTGTGGATGTAGAAGTAGC 1217
Query 1200 TAATCAAGGCTGTCCGGTCAAATTAAACGAGAG-CCATCAGAGTCACGGGCAGAAGGCTG 1258
|||||||| ||||||||||||||| |||| || ||||||||||||||||||||| ||||
Sbjct 1218 AAATCAAGGTTGTCCGGTCAAATTAGACGA-AGGCCATCAGAGTCACGGGCAGAATGCTG 1276
Query 1259 TGATGATATCTCAGCTCTTTGCAAAACTTTGTACCATACAGAAATCAGATCAATCGACTG 1318
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||
Sbjct 1277 TGATGATATCTCAGCTCTTTGCAAAACTGTGTACCATACAGAAATCAGATCTATCAACTA 1336
Query 1319 TCCAATCAAATAAAGATTTCCAAGCTTTGGCTTCTGATGAACATGCAAATTCTGTCACCT 1378
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 TCCAATCAAATGAAGATTTCCAAGCTTTGGCTTCTGATGAACATGCAAATTCTGTCACCT 1396
Query 1379 CTTGCTCTAAAAACGCTGGCGATGAAAAT 1407
|||||||||||||||| || |||||||||
Sbjct 1397 CTTGCTCTAAAAACGCAGGTGATGAAAAT 1425
Score = 544 bits (294), Expect = 3e-153
Identities = 356/386 (92%), Gaps = 3/386 (1%)
Strand=Plus/Plus
Query 1408 AGTAAGCTCTGAGAACTTGGTG-TCATCTGGGGGTTAGCAAAAAAGATGACAGCTGCAAA 1466
|||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||
Sbjct 1455 AGTAAGCTCTGAGAACTTGGTGTTCATATGGGGGTTAGGGAAAAAGATGACAGCTGCAAA 1514
Query 1467 ACTGAAGAATGTCTTACAAAAGTCACACCCCGTGTTTGCGCA-AGAGTTTGATGTTAAAT 1525
|||||||||||| ||||||||||||||||||| || ||| | ||||||||||||||| |
Sbjct 1515 GCTGAAGAATGTCCTACAAAAGTCACACCCCGTCTTCGCG-AGAGAGTTTGATGTTAAGT 1573
Query 1526 ACTTAGACGGGAGCTGTGCTATTGTGGTATTTTGGGAGTCAGGTCCCTCAAAAACTTTCC 1585
|| ||||| |||||| ||||||| |||| ||||||||||||||||| ||| | |||||||
Sbjct 1574 ACATAGACCGGAGCTCTGCTATTTTGGTGTTTTGGGAGTCAGGTCCTTCAGAGACTTTCC 1633
Query 1586 TCAGTGCGGTTAACAATGAAGAGCAACTTGATGGTTCCTTAAGAGAGATGGTTGCACAAG 1645
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1634 TCAGTGCGGTCAACAATGAAGAGCAACTTGATGGTTCATTAAGAGAGATGGTTGCAGAAG 1693
Query 1646 GTCTAAGAGCTTCAGGTTACGAGACTTACAAGAGAGCATGTAGATTAGGCTTCTGGGAGG 1705
| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1694 GGCTAAGAGGGGCAGGTTACGAGACTTACAAGAGAGCTTGTAGATTAGGCTTCTGGGAGG 1753
Query 1706 CTGACTTGGCGGAATCTTTAGACAAAGCATTGGAATCTTCAGATACCGATCCTGATTCCG 1765
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1754 CTGACTTGGCGGAATCTTTAGACAAAGCATTGGAATCTTCAGATACCGACCCTGATTCGG 1813
Query 1766 ACACCAAACCATCAGAGATTGATTGG 1791
|||| |||||||||||||||||||||
Sbjct 1814 ACACTAAACCATCAGAGATTGATTGG 1839
> AT3G25440.1 | Symbols: | RNA-binding CRS1 / YhbY (CRM) domain
protein | chr3:9223973-9225710 FORWARD LENGTH=1565
Length=1565
Score = 1869 bits (1012), Expect = 0.0
Identities = 1211/1303 (93%), Gaps = 29/1303 (2%)
Strand=Plus/Plus
Query 1885 GCCTCAATGATTCTACGCCGTAAATCTCGGAAACTAGGGTTCTTAGCCTCCTCTTCGCCG 1944
||||||||| |||||||||||||||||||| | ||||||||| |||||||||| ||||||
Sbjct 68 GCCTCAATGCTTCTACGCCGTAAATCTCGGCAGCTAGGGTTCCTAGCCTCCTCCTCGCCG 127
Query 1945 CTCTTTTCCAG-TTTGAATTCCAAGAATCGCCCTATCAGTAGCTCTG-GTAATATTGTGT 2002
|| |||||||| ||| ||||||| ||||||| ||||| ||||| | ||||||||||||
Sbjct 128 CTTTTTTCCAGCTTT-AATTCCATGAATCGCACTATC---AGCTC-GTGTAATATTGTGT 182
Query 2003 GCAAGGTTTTGCTTAAGGAGTCTCTTAATGGACCAATGTGGAACGTTAGCTTCTTAAGAT 2062
|||||||||||| |||||| ||||||| | ||||||||||||||||||||||||||||||
Sbjct 183 GCAAGGTTTTGCATAAGGAATCTCTTACTAGACCAATGTGGAACGTTAGCTTCTTAAGAT 242
Query 2063 CATCTTGGTTTCATTCGACTTCAGTTCGTGAGACCGGTGAT--TG-C-TTGAGTAAATCT 2118
| |||| ||||||||| ||| ||| |||||||||||||||| || | || || ||||||
Sbjct 243 CCTCTTCGTTTCATTCAACTCCAGCTCGTGAGACCGGTGATGATGACATT-AGCAAATCT 301
Query 2119 GAGAACAGTTCGAGTCAAGATGGAGGCAGTTCTACTAAATTAAAGAGGAAGAAGCTCAAA 2178
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||
Sbjct 302 GAGAACAGTTCGAGTCAAGATGGAGACAGTTGTACTAAATTAAAGAGGAAGAAGCTGAAA 361
Query 2179 GGTAAGCGTGCGGTTGTGCGGTGGTTAAAGTTTTTCCGGTGGAAGAAAAAGAAAGAGTTT 2238
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 362 GGTAAGCGTGCGGTTGTGCGGTGGCTAAAGTTTTTCCGGTGGAAGAAAAAGAAAGAATTT 421
Query 2239 GAAAGAATGACTGCTGAAGAAAAGATACTTAACAAACTAACAAAGGCTCGAAAGAAAGAG 2298
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 422 GAAAGAATGACTTCTGAAGAAAAGATACTTAACAAACTAAGAAAGGCTCGAAAGAAAGAG 481
Query 2299 GAGCGGCTTATGGAGACGATGAAGAAGCTGGAACCTTCAGAGTCAGCAGAAACGACACAT 2358
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 GAACGGCTTATGGAGACGATGAAGAAGCTGGAACCTTCAGAGTCAGCAGAAACGACACAT 541
Query 2359 GACCCTGAGATATTGACACCAGAGGAGCATTTTTATTATCTGAAAATGGGTTTGAAGTGC 2418
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 542 GACCCTGAGATATTGACTCCAGAAGAACATTTTTATTATCTGAAAATGGGTTTGAAGTGC 601
Query 2419 AAGAATTACGTTCCGGTTGGGAGACGTGGGATATACCAAGGAGTGATTTTGAACATGCAT 2478
|||||||| ||||| || |||||||||||||| ||||||||||||||| |||||||||||
Sbjct 602 AAGAATTATGTTCCTGTAGGGAGACGTGGGATTTACCAAGGAGTGATTCTGAACATGCAT 661
Query 2479 CTTCACTGGAAGAAGCATCAGACGCTACAGGTTGTTATCAAAACGTTTACACCTGATGAA 2538
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 662 CTTCACTGGAAGAAGCATCAGACGCTACAGGTTGTGATCAAAACGTTTACACCTGATGAA 721
Query 2539 GTGAAGGAGATTGCTGTTGAGTTAGCGAGGTTGACTGGAGGGATTGTGCTTGATGTACAT 2598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 GTGAAGGAGATTGCTGTTGAGTTAGCGAGGTTGACTGGAGGGATTGTGCTTGATGTACAT 781
Query 2599 GAAGGGAACACGATAATTATGTATAGAGGGAAGAACTATGTTCAACCTCCGACTGAGATC 2658
||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||
Sbjct 782 GAAGGTAACACGATAATTATGTACAGAGGGAAGAACTATGTGCAACCTCCTACTGAAATC 841
Query 2659 ATGTCGCCGAGGATTACTCTTCCGAGGAAAAAGGCTTTGGATAAATCTAAATGTAGGGAT 2718
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 842 ATGTCGCCGAGGATTACTCTTCCGAGGAAAAAGGCTTTGGATAAGTCTAAATGTAGGGAT 901
Query 2719 GCGCTTCGTGCGGTTAGAAAGTATATTCCGAGGCTTGAACAAGAGCTCCAGTTGCTTCAT 2778
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 902 GCGCTTCGTGCGGTTAGGAAGTATATTCCGAGGCTTGAACAGGAGCTCCAGTTGCTTCAA 961
Query 2779 GCGCAAGCTGAAACGAAACGAGAATATC-CGAGTGTGAAGGTTGATGATACTCAAGAGAG 2837
|| |||||||||||||| || || || | ||| ||||||||||||||||| |||||||||
Sbjct 962 GCACAAGCTGAAACGAAGCGGGATTA-CACGAATGTGAAGGTTGATGATAATCAAGAGAG 1020
Query 2838 GTCAGACGAGTTgaagaagattatagaaagaagtgaagagtctttggaggatgagcaaga 2897
|||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 1021 GTCAGAAGAGTTGAAGAAGATTATAGAAAGAAGCGAAGAGTGTTTGGAGGATGAGCAAGA 1080
Query 2898 agaagaagaagCAGGATCAGAACTAGCAACGGATTCAGATCTTTCGGATATTTTTGAGAC 2957
|||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1081 AGAAGATGAAGCAGGATTAGAACTAGCGACGGATTCAGATCTTTCGGATATTTTTGAGAC 1140
Query 2958 TGATTCGGAATTAGAAGACGAGAAAACAGAGCGACCGCTTTTTCTTGAAGAGTTTGAGAA 3017
|||||||||||||||||| | ||||||||||||||| ||||||||||| |||||||||||
Sbjct 1141 TGATTCGGAATTAGAAGATGCGAAAACAGAGCGACCACTTTTTCTTGAGGAGTTTGAGAA 1200
Query 3018 ATTCCCAGCGATAAACAACAACAGAGAAGACGAAGACTTTGGG-A-------A-GGCTAA 3068
||||||||| |||||||||| |||||||||||||||||||| | | ||||||
Sbjct 1201 ATTCCCAGCTATAAACAACA---GAGAAGACGAAGACTTTGGGGATCTCGGGAAGGCTAA 1257
Query 3069 ATCAGAAGGTGAGGAGAATGATGAT-A-A-GTCACCAAACTTTGATGAAGTAGATAAGAT 3125
||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 1258 ATCAGAAGGTGAGGAGAATGATGATGATAAGTCACCAAACTTTGATGAAGTAGATAAGAT 1317
Query 3126 GTTTCTTCGGGCTGCTTCGCTTTTAAAGAAGAAAAGACGATGA 3168
||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1318 GTTTCTTCGGGCTGCTTTTCTTTTAAAGAAGAAAAGACGATGA 1360
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 157574367963
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5