BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905709
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 774 0.0
AT1G27170.1 | Symbols: | transmembrane receptors;ATP binding |... 604 6e-172
AT1G27180.1 | Symbols: | disease resistance protein (TIR-NBS-L... 549 3e-155
> AT1G27150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:9429047-9432274 FORWARD LENGTH=1743
Length=1743
Score = 774 bits (419), Expect = 0.0
Identities = 476/504 (94%), Gaps = 1/504 (0%)
Strand=Plus/Plus
Query 707 AGGTTCTTAGTTGTGGGAGGAAGAGAAAAGTGATTCTAGAAGCACCACTCTACAATAAAG 766
|||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 222 AGGTTCTTAGTTATGGGAGGAAGAGGAAAGTGATTCTAGAAGCACCACTCTACGATAAAG 281
Query 767 ATTGTGTTTTGGGCAACATTTTAGCTGCTCATTTCCTTTCTTCATCTGATCCTTCCAGAG 826
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 282 ATTGTGTTTTGGGCAGCATTTTAGCTGCTCATTTCCTTTCTTCATCTGATCCTTCTAGAG 341
Query 827 CTAATTCCTACGTTGAAACTGCGGCATCCAATCTTGAACAATGTACACCTTATGAGAAAG 886
|||||||||| |||||| |||||||||| ||||| ||||||| |||||||||||||||||
Sbjct 342 CTAATTCCTATGTTGAAGCTGCGGCATCTAATCTCGAACAATCTACACCTTATGAGAAAG 401
Query 887 CGGTTTACGAGGCTCTTACATACCTAATCTCTGAGGACAGGGATGACGACTTGGCTTTTG 946
|||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 402 CGGTTTACGAGGCTGTTACTTACCTAATCTCTGAGGATAGGGATGACGACTTGGCTTTTG 461
Query 947 AATTGCACACCAAGCTACTTAATAGATTCCCAAAGGATTTGGCCTCTTTGAAAAGGGCAC 1006
|| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||| || |
Sbjct 462 AAATGCACACCAAGCTACTTAAAAGATTCCCAAAGGACTTGGCTTCTTTGAAAAGAGCGC 521
Query 1007 AGCTTTTATGTTTCTACATGGGTCAACCGGATCCCTTTTTGGGTCTTGTTCAGCAGGTTC 1066
|||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 522 AGCTTTTAAGTTTCTACATGGGTCAACCTGATCCCTTCTTGGGTCTTGTTCAGCAGGTTC 581
Query 1067 TACCTGCGAATCAAGAAGAAAGTTATATTCATGGTATACTTGCGTTCCCATTGTTAGAAC 1126
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 582 TACCTGCGAATCAAGAAGAAAGTTATATTCATGGTTTACTTGCGTTCCCATTGTTAGAAC 641
Query 1127 TTGGTCGAATGGAAGAAGCTGTGGCAGCTTCCAAAAAAGGCTATGAGATAAACAAAGAAG 1186
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 642 TTGGTCGAATGGAAGAAGCTGCGGCAGCTTCCAGAAAAGGCTATGAGATAAACAAAGAAG 701
Query 1187 AGGCCTGGGCACATCACTGTGTTG 1210
| || ||||||||||||||| |||
Sbjct 702 ACGCTTGGGCACATCACTGT-TTG 724
Score = 350 bits (189), Expect = 3e-95
Identities = 234/255 (92%), Gaps = 5/255 (2%)
Strand=Plus/Plus
Query 1264 TTGTGTCATGTTCTTCAACATGAGTGTCGGTTTAAAGAAGCAGTGGAGTTCGTGGAACCA 1323
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||
Sbjct 722 TTGTGTCATGTTCTTCAACATGAATGTCGGTTTAAAGAAGCAGTGGAGTTCATGGAAGCA 781
Query 1324 CTCACA-GAATCTTGGCCATCTTGCTC-T--TTCTTCTATACACACAATTGGTGGCATGT 1379
||| || ||| ||||||| |||||||| | ||| | |||||||||||||||||||||||
Sbjct 782 CTCGCAGGAA-CTTGGCCCTCTTGCTCATCCTTCATGTATACACACAATTGGTGGCATGT 840
Query 1380 TGCTCTTTGTTACTTGGAAGGAGGATCACCAATGAGTAAAGTAGAGGAGATTTATGATCA 1439
|||||| |||||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 841 TGCTCTCTGTTACTTAGAAGGAGGGTCCCCAATGAGTAAAGTAGAGGAGATTTATGATCA 900
Query 1440 TCACATTTGGAAAGAATTGGAGAAAGACGACGCTGTTCCTCCTGAAGTTTATCTGAATGC 1499
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 901 TCACATCTGGAAAGAATTGGAGAAAGACGATGCTGTTCCTCCTGAAGTTTATCTCAATGC 960
Query 1500 GCTGGGCTTGTTGAT 1514
|||||||||||||
Sbjct 961 ATTGGGCTTGTTGAT 975
> AT1G27170.1 | Symbols: | transmembrane receptors;ATP binding
| chr1:9434559-9439417 FORWARD LENGTH=4512
Length=4512
Score = 604 bits (327), Expect = 6e-172
Identities = 387/416 (93%), Gaps = 3/416 (1%)
Strand=Plus/Plus
Query 175 TGCAACTTTCTGAAACAGTTTCTGCCTAAGTCAATTGGAGATATGGATACACTATATAGC 234
||||| |||||| | ||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 2971 TGCAAATTTCTG--A-AGTTTCTGCCTAAGTCAATTGGAGATATGGACACACTCTATAGC 3027
Query 235 TTAAACCTTCTAGGCTCTAACATTGAGGAACTGCCGGAAGATTTTGGCAAGCTGGAAAAC 294
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3028 TTAAACCTTGAAGGCTCTAACATTGAGGAACTGCCGGAAGAATTTGGCAAGCTGGAAAAG 3087
Query 295 CTAGTTGAACTGCGAATGAGCAACTGTAAAATGCTCAAGAGGCTTCCTGAATCGTTTGGA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3088 CTAGTTGAACTGCGAATGAGCAACTGTAAAATGCTCAAGAGGCTTCCTGAATCGTTTGGA 3147
Query 355 GACTTGAAATCTCTTCACCATCTGTACATGCAGGAAACTTTGGTCTCAGAGTTGCCAGAA 414
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 3148 GACTTGAAATCTCTTCACCGTCTGTACATGAAGGAAACTTTGGTCTCAGAGTTGCCAGAA 3207
Query 415 AGTTTCAGAAACCTTTCAGATTTAATGATACTGAAAATGCCGAAGAAGCCTCTTTATAGG 474
|||||| ||||||| ||| |||||||| ||||| |||||| |||||||||||||| |||
Sbjct 3208 AGTTTCGGAAACCTCTCAAATTTAATGGTACTGGAAATGCTGAAGAAGCCTCTTTTTAGA 3267
Query 475 ATTGCTGAGAGTGATGCTGCAGGTACAAGCGAAGAACCTCGTTTTGTAGAAGTACCAAAC 534
||| |||||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 3268 ATTTCTGAGAGTAATGTTCCAGGTACAAGCGAAGAACCTCGTTTTGTAGAAGTACCAAAC 3327
Query 535 TCTTTCTCAAACCTCTTGTTGCTCGAGGAACTAGATGCTCGCAGCTGGAGAATATC 590
||||||||||| |||||| ||| ||||||||||||||| ||||||||||||||||
Sbjct 3328 TCTTTCTCAAAGCTCTTGAAGCTTGAGGAACTAGATGCTTGCAGCTGGAGAATATC 3383
> AT1G27180.1 | Symbols: | disease resistance protein (TIR-NBS-LRR
class), putative | chr1:9439859-9446106 FORWARD LENGTH=4959
Length=4959
Score = 549 bits (297), Expect = 3e-155
Identities = 364/397 (92%), Gaps = 2/397 (1%)
Strand=Plus/Plus
Query 195 TCTGCCTAAGTCAATTGGAGATATGGATACACTATATAGCTTAAACCTTCTAGGCTCTAA 254
||||||||| |||| ||| | ||||| ||||| ||||||||||||||| ||||||||||
Sbjct 3351 TCTGCCTAAAACAATCGGAAAGATGGACACACTCTATAGCTTAAACCTTGTAGGCTCTAA 3410
Query 255 CATTGAGGAACTGCCGGAAGATTTTGGCAAGCTGGAAAACCTAGTTGAACTGCGAATGAG 314
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 3411 CATTGAGGAACTGCCGGAAGAATTTGGCAAGCTGGAAAACCTAGTTGAACTGCGAATGAA 3470
Query 315 CAACTGTAAAATGCTCAAGA-GGCTTCCTGAATCGTTTGGAGACTTGAAATCTCTTCACC 373
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 3471 CAACTGTAAAATGCTCAA-ACGGCTTCCTAAATCGTTTGGAGACTTGAAATCTCTTCACC 3529
Query 374 ATCTGTACATGCAGGAAACTTTGGTCTCAGAGTTGCCAGAAAGTTTCAGAAACCTTTCAG 433
||||||||||||||||||||||||| | |||||||||||||||||| ||||||| |||
Sbjct 3530 GTCTGTACATGCAGGAAACTTTGGTCGCGGAGTTGCCAGAAAGTTTCGGAAACCTCTCAA 3589
Query 434 ATTTAATGATACTGAAAATGCCGAAGAAGCCTCTTTATAGGATTGCTGAGAGTGATGCTG 493
|||||||| ||||| |||||| |||||||||||||| ||| ||| |||||||| ||| |
Sbjct 3590 ATTTAATGGTACTGGAAATGCTGAAGAAGCCTCTTTTTAGAATTTCTGAGAGTAATGTTC 3649
Query 494 CAGGTACAAGCGAAGAACCTCGTTTTGTAGAAGTACCAAACTCTTTCTCAAACCTCTTGT 553
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3650 CAGGTACAAGCGAAGAACCTCGTTTTGTAGAAGTACCAAACTCTTTCTCAAAGCTCTTGA 3709
Query 554 TGCTCGAGGAACTAGATGCTCGCAGCTGGAGAATATC 590
||| ||||||||||||||| ||||||||||||||||
Sbjct 3710 AGCTTGAGGAACTAGATGCTTGCAGCTGGAGAATATC 3746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75652221315
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5