BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905719
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
AT1G24070.1 | Symbols: ATCSLA10, CSLA10 | cellulose synthase-li... 1218 0.0
AT4G13410.1 | Symbols: ATCSLA15, CSLA15 | Nucleotide-diphospho-... 621 4e-177
AT5G16190.1 | Symbols: ATCSLA11, CSLA11 | cellulose synthase li... 468 5e-131
AT4G16590.1 | Symbols: ATCSLA01, CSLA01, ATCSLA1 | cellulose sy... 374 1e-102
> AT1G24070.1 | Symbols: ATCSLA10, CSLA10 | cellulose synthase-like
A10 | chr1:8516238-8519734 REVERSE LENGTH=1858
Length=1858
Score = 1218 bits (659), Expect = 0.0
Identities = 854/940 (91%), Gaps = 45/940 (5%)
Strand=Plus/Plus
Query 27 GAAGCTTGAAGCATCCGTTAATGGTGTGAGGATAAGCATCGACACAACATGGACACGAGA 86
|||||||||| ||||| | ||||||| |||||||||| ||||||| ||||||||||||||
Sbjct 108 GAAGCTTGAAACATCCATAAATGGTGCGAGGATAAGCTTCGACACGACATGGACACGAGA 167
Query 87 ATTGAGGAGCTTCCTTATAGTTCCCTTATTCAAGTGTTTGGTGGCTCTTTGTTTGATAAT 146
||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 168 ATTTAGGAGCTTATTTATAGTTCCCTTATTCAAGTGTTTGGTGGCTTTTTGTTTGATAAT 227
Query 147 CTCCCTCTTAGTTTTCATAGAGGGTATATACATGAACCTTGTAGTGCTCTACGTCAAGTT 206
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 228 CTCCCTCTTAGTTTTCATAGAGGGTATATACATGAACCTTGTAGTACTCTACGTCAAGGT 287
Query 207 GTTTAAGCGAAAACCCGAAAAA-TCTACAAATAGGAGCCGATGCCGGAGGACATTGAGCT 265
|||| ||||||||||||||||| | || | || |||| |||||| ||||||||||||||
Sbjct 288 GTTTGAGCGAAAACCCGAAAAAGTTTATAGATGGGAGGCGATGCAAGAGGACATTGAGCT 347
Query 266 CGGACATGAAACCTACCCCATGGTCCTTGTTCAAATTCCAATGTACAACGAAAAAGAGGT 325
||||||||||||||||||||||||||||| ||||||||||||||||||| |||| | |
Sbjct 348 TGGACATGAAACCTACCCCATGGTCCTTGTCCAAATTCCAATGTACAACG-AAAA-A-G- 403
Query 326 ATATCTACATGTATTCAGTCCTTCAATTATCTATAGGTGCTGCATGTAGACTAATCTGGC 385
| | |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 404 --------A-G------GTCCTTCAATTATCTATAGGTGCTGCATGTAGACTAATATGGC 448
Query 386 CATTGGACCGCCTAATTGTTCAAGTTCTAGATGATTCCACTGATCAAACCATCAAGAAGT 445
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 449 CATTGGACCGCCTAATTGTTCAAGTTTTAGATGATTCCACTGATCAAACCATC------- 501
Query 446 ATAGAACTGAATTTCAGGGGCTGGTGAACACAGAGTGTGCAAAGTGGGAAAGCCAAGGCG 505
| || | | |||||||||||||||||||||||| ||||||||| |||| |
Sbjct 502 A-AG----G------A---GCTGGTGAACACAGAGTGTGCAAAATGGGAAAGCAAAGGTG 547
Query 506 TAAATATAAAGTGTGAGAGGAGAGACAACAGAAATGGCTATAAAGCCGGAGCTCTTAAAC 565
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 548 TAAATATAAAGTGTGAGAGGAGAGACAACAGAAATGGCTACAAAGCCGGAGCTCTTAAAG 607
Query 566 AAGGCATGAAGCACAACTACGTGAAGCTATGCAGA-TATGTTGTCATCTTTGACGCAGAC 624
||||||||||||||||||||||||||||||||| | ||||| |||||||| |||||||||
Sbjct 608 AAGGCATGAAGCACAACTACGTGAAGCTATGCA-ATTATGTCGTCATCTTCGACGCAGAC 666
Query 625 TTTCAACCGGAGCCTGATTACCTCCAACGCTCTGTCCCCTTCCTCGTTCATAACCCCGAG 684
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 667 TTCCAACCGGAGCCTGATTACCTCCAACACTCTGTCCCCTTCCTCGTTCATAACCCCGAG 726
Query 685 GTCGCTCTTGTTCAAGCCCGATGGAGATTCATGAACTCAAACAAGTGCTTGATGACGAGG 744
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 727 GTCGCTCTGGTTCAAGCCCGATGGAGATTCATGAACGCAAACAAGTGCTTGATGACGAGG 786
Query 745 ATGCAAGAGATGTCCCTCAACTACCACTTCATGGCGGA-AATAGAATCTGGATCCACTAG 803
||||||||||||||||||||||||||||| ||||| || | ||||||||||||||||||
Sbjct 787 ATGCAAGAGATGTCCCTCAACTACCACTTTATGGCAGAGCA-AGAATCTGGATCCACTAG 845
Query 804 ACATGCCTTCTTTAGCTTCAATGGAACTGCGGGTGTATGGAGAATGGACGCAATGGAAGA 863
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 846 ACATGCCTTCTTTAGCTTCAATGGAACTGCGGGTGTATGGAGAATGGCCGCGATGGAAGA 905
Query 864 AGCTGGAGGATGGCATGACCGGACCACTGTAGAGGACATGGACTTGGCCGTTCGTGCTGG 923
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 906 AGCTGGAGGATGGCATGACCGGACTACTGTAGAGGACATGGACTTGGCCGTTCGTGCTGG 965
Query 924 TCTTCTCGGCTGGAAATTTGTCTTTCTCAATGACCTCACG 963
||||||||||||||||||||||||||||||||||||||||
Sbjct 966 TCTTCTCGGCTGGAAATTTGTCTTTCTCAATGACCTCACG 1005
> AT4G13410.1 | Symbols: ATCSLA15, CSLA15 | Nucleotide-diphospho-sugar
transferases superfamily protein | chr4:7792219-7795824
REVERSE LENGTH=1614
Length=1614
Score = 621 bits (336), Expect = 4e-177
Identities = 751/942 (80%), Gaps = 66/942 (7%)
Strand=Plus/Plus
Query 31 CTTGAAGCATCCGTTAATGGTGTGAGGATAAGCATCGA-CACAACATGGACACGAGAATT 89
||| |||||||||| |||||||| |||||| ||| || ||| | ||| | |||||
Sbjct 82 CTTAAAGCATCCGTGGATGGTGTGGGGATAAACAT-GAGCACTATGTGG--A-GAGAAAC 137
Query 90 GAGGAGCT-TCCTT-ATAGTTCCCTTATTCAAGTGTTTGGTGGCTCTTTGTTTGATAATC 147
|||| | | || |||||||| || ||||||||| | |||| | | |||||||| |||
Sbjct 138 AAGGA-ATGT-ATTCATAGTTCCATTGTTCAAGTGTATAGTGGTTATGTGTTTGATCATC 195
Query 148 TCCCTCTTAGTTTTCATAGAGGGTATATACATGAACCTTGTAGTGCTCTACGTCAAGTTG 207
|| |||||||||||| | ||| || | ||||||||||||||||| ||||| |||||||||
Sbjct 196 TCGCTCTTAGTTTTCGTTGAGAGTGTTTACATGAACCTTGTAGTACTCTATGTCAAGTTG 255
Query 208 TTTAAGCGAAAACCCGA-AAAATCTACAAATAGGAGCCGATGCCGGAGGACATTGAGCTC 266
||||| |||||||| || ||| ||||||||| |||| | |||| |||||| || |||||
Sbjct 256 TTTAACCGAAAACCAGAGAAAGTCTACAAATGGGAGGCAATGCAGGAGGATATGGAGCTT 315
Query 267 GGACATGAAACCTACCCCATGGTCCTTGTTCAAATTCCAATGTACAACGAAAAAGAGGTA 326
|| ||| ||| || || ||||||||||||||||| ||||||||||||||| |||||
Sbjct 316 GGTCATCAAAATTATCCGATGGTCCTTGTTCAAATCCCAATGTACAACGAACGAGAGG-- 373
Query 327 TATCTACATGTATTCAGTCCTTCAATTATCTATAGGTGCTGCATGTAGACTAATC-TGGC 385
| | | || | ||||||||||||||||||| || ||||||| | ||||
Sbjct 374 ----T-C---T-TT--G------AATTATCTATAGGTGCTGCGTGCAGACTAA-CATGGC 415
Query 386 CATTGGACCGCCTAATTGTTCAAGTTCTAGATGATTCCACTGATCAAACCATCAAGAAGT 445
||| |||||| ||||||||||||||| ||||||||||||| ||| | | || |
Sbjct 416 CATCGGACCGTCTAATTGTTCAAGTTTTAGATGATTCCACCGAT-----C--C-AGCA-- 465
Query 446 ATAGAACTGAATTTCAGGGGCTGGTGAACACAGAGTGTGCAAAGTGGGAAAGC-CAAGGC 504
|| | | | || ||||||| || || ||| |||| |||| | | ||| |
Sbjct 466 AT----C---A--T--GGAACTGGTGAGCATGGAATGTACAAAATGGG-CATCAAAAGAC 513
Query 505 GTAAATATAAAGTGTGAGAGGAGAGACAACAGAAATGGCTATAAAGCCGGAGCTCTTAAA 564
|||||||||| | ||||||| |||| |||||||||||||| || || |||||||||||
Sbjct 514 ATAAATATAAATTATGAGAGGCGAGAGAACAGAAATGGCTACAAGGCTGGAGCTCTTAAG 573
Query 565 CAAGGCATGAAGCACAACTACGTGAAGCTA-TG-CAGATATGTTGTCATCTTTGACGCAG 622
|| ||||||| ||||| ||||| |||| | || || |||| ||| ||||||||| || |
Sbjct 574 CACGGCATGAGGCACAGTTACGTCAAGC-AGTGCCA-ATATCTTGCCATCTTTGATGCTG 631
Query 623 ACTTT-CAACCGGAGCCTGATTACCTCCAACGCTCTGTCCCCTTCCTCGTTCATAACCCC 681
| ||| || || ||||| ||||||||||||||| || ||||||| || | || |||||
Sbjct 632 A-TTTCCAGCCCGAGCCCGATTACCTCCAACGCGCTATCCCCTTTCTTATCCACAACCCT 690
Query 682 GAGGTCGCTCTTGTTCAAGCCCGATGGAGATTCATGAACTCAAACA-AGTGCTTGATGAC 740
|||||||||||||| ||||| ||||||||||| | ||| | |||| | ||||| |||||
Sbjct 691 GAGGTCGCTCTTGTCCAAGCTCGATGGAGATTTGTAAACGCTAACACA-TGCTTAATGAC 749
Query 741 GAGGATGCAAGAGATGTCCCTCAACTACCACTTCATGGCGGA-AATAGAATCTGGATCCA 799
|||||||||||||||||| || |||||||| |||||||| || | | ||||||||||||
Sbjct 750 GAGGATGCAAGAGATGTCTCTGAACTACCATTTCATGGCAGAGCA-ACAATCTGGATCCA 808
Query 800 CTAGACATGCCTTCTTTAGCTTCAATGGAACTGCGGGTGTATGGAGAATGGACGCAATGG 859
| |||||||| |||||| |||| |||||||||||||| ||||||||||||| || ||||
Sbjct 809 CAAGACATGCTTTCTTTGGCTTTAATGGAACTGCGGGAGTATGGAGAATGGTGGCGATGG 868
Query 860 AAGAAGCTGGAGGATGGCATGACCGGACCACTGTAGAGGACATGGACTTGGCCGTTCGTG 919
||||||||||||||||| | |||||||| || ||||||||||||||||||||||||||||
Sbjct 869 AAGAAGCTGGAGGATGGAAGGACCGGACGACGGTAGAGGACATGGACTTGGCCGTTCGTG 928
Query 920 CTGGTCTTCTCGGCTGGAAATTTGTCTTTC-TCAATGACCTC 960
|||||||||||| ||||||||| |||| | |||||||||||
Sbjct 929 TTGGTCTTCTCGGTTGGAAATTTATCTT-CGTCAATGACCTC 969
> AT5G16190.1 | Symbols: ATCSLA11, CSLA11 | cellulose synthase
like A11 | chr5:5283550-5286293 REVERSE LENGTH=1445
Length=1445
Score = 468 bits (253), Expect = 5e-131
Identities = 567/710 (80%), Gaps = 56/710 (8%)
Strand=Plus/Plus
Query 252 GAGGACATT-GAGCTCGGACATGAAACCTACCCCATGGTCCTTGTTCAAATTCCAATGTA 310
|||||| || ||||||||| || ||| || |||||||| ||||| ||||| ||||||||
Sbjct 7 GAGGAC-TTGGAGCTCGGAAATCAAAACTTTCCCATGGTTCTTGTCCAAATCCCAATGTA 65
Query 311 CAACGAAAAAGAGGTATATCTACATGTATTCAGTCCTTCAATTATCTATAGGTGCTGCAT 370
||||||| |||||| | | || | | || | | | | | | | |||||||| |
Sbjct 66 CAACGAACGAGAGGTGT-T-TA-A-G--TT-A-T-C--C----A--T-T-GGTGCTGCTT 106
Query 371 GTAGACTAATCTGGCCATTGGACCGCCTAATTGTTCAAGTTCTAGATGATTCCACTGATC 430
| ||||| || ||||||||||| || ||||| ||||||||| ||||||||||||||||||
Sbjct 107 GCAGACTCATATGGCCATTGGATCGACTAATCGTTCAAGTTTTAGATGATTCCACTGATC 166
Query 431 AAACCATCAAGAAGTATAGAACTGAATTTCAGGGGCTGGTGAA-CACAGAGTGTGCAAAG 489
|||||| || | ||| | |||| || ||||||||||| |||
Sbjct 167 CCACCATC-------AT-G----GAA----A-----TGGT-AAGCACAGAGTGTGGAAAA 204
Query 490 TGGGAAAGCC-AAGGCGTAAATATAAAGTGTGAGAGGAGAGACAACAGAAATGGCTATAA 548
|||| || || ||||| |||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 205 TGGGCAA-CCAAAGGCATAAACATAAAATGTGAGAGGAGAGACAATAGAAATGGCTATAA 263
Query 549 AGCCGGAGCTCTTAAACAAGGCATGAAGCACAACTACGT-GAAGCTATGCAGATATGTTG 607
|| ||||||||||||||||| |||| ||| | ||||| || | ||||| || |||
Sbjct 264 GGCTGGAGCTCTTAAACAAGGTATGAGGCATAGTTACGTCAAAAC-ATGCACCTACATTG 322
Query 608 TC-ATCTTTGACGCAGACTTTCAACCGGAGCCTGATTACCTCCAACGCTCTGTCCCCTTC 666
| ||||| || || || ||||| || ||||| || |||||| ||||| ||||||| ||
Sbjct 323 -CAATCTTCGATGCTGATTTTCAGCCAGAGCCCGACTACCTCGAACGCACTGTCCCATTT 381
Query 667 CTCGTTCATAACCCCGAGGTCGCTCTTGTTCAAGCCCGATGGAGATTCATGAACTCAAAC 726
|| | || || ||||| |||||||||||||||| ||||||| ||| ||||| ||||
Sbjct 382 CTTATCCACAATCCCGAACTCGCTCTTGTTCAAGCTCGATGGAAATTTGTGAACGCAAAG 441
Query 727 AAGTGCTTGATGACGAGGATGCAAGAGATGTCCCTCAACTACCACTTCATGGCGGA-AAT 785
|||||||||||||| |||||||| |||||||||||||| ||||| |||| ||| || |
Sbjct 442 AAGTGCTTGATGACTAGGATGCAGGAGATGTCCCTCAATTACCATTTCACGGCAGAGCA- 500
Query 786 AGAATCTGGATCCACTAGACATGCCTTCTTTAGCTTCAATGGAACTGCGGGTGTATGGAG 845
|||||| |||||||||||||||||||||||| |||| ||||| |||||||||||||||||
Sbjct 501 AGAATCCGGATCCACTAGACATGCCTTCTTTGGCTTTAATGGGACTGCGGGTGTATGGAG 560
Query 846 AATGGAC-GCAATGGAAGAAGCTGGAGGATGGCATGACCGGACCACTGTAGAGGACATGG 904
| ||| | || |||||||||||||| || ||| | ||||||||||| |||||||||||||
Sbjct 561 ACTGG-CGGCGATGGAAGAAGCTGGTGGTTGGAAAGACCGGACCACCGTAGAGGACATGG 619
Query 905 ACTTGGCCGTTCGTGCT-GGTCTTCTCGGCTGGAAATTTGTCTTTCTCAA 953
||||||||||||||| | ||||| | ||||||||||||||||||| ||||
Sbjct 620 ACTTGGCCGTTCGTG-TAGGTCTACACGGCTGGAAATTTGTCTTTGTCAA 668
> AT4G16590.1 | Symbols: ATCSLA01, CSLA01, ATCSLA1 | cellulose
synthase-like A01 | chr4:9345150-9349221 FORWARD LENGTH=1907
Length=1907
Score = 374 bits (202), Expect = 1e-102
Identities = 398/491 (81%), Gaps = 20/491 (4%)
Strand=Plus/Plus
Query 483 TGCAAAGTGGGAAAGCCAAGGCGTAAATATAAAGTGTGAGAGGAGAGACAACAGAAATGG 542
|||||| ||| ||||||||||| |||| |||| |||||| |||||||| ||||| || ||
Sbjct 594 TGCAAAATGGCAAAGCCAAGGCATAAACATAAGGTGTGAAAGGAGAGATAACAGGAACGG 653
Query 543 CTATAAAGCCGGAGCTCTTAAACAAGGC-ATGAAGCACAACTACGTGAAGCTATGCAGA- 600
||| |||||||||||| | ||| || || | | ||| | |||||| |||| |||| ||
Sbjct 654 CTACAAAGCCGGAGCTATGAAAGAA-GCTCTTACGCAGAGCTACGTCAAGCAATGC-GAC 711
Query 601 TAT-GTTGTCA-TCTTTGACGCAGACTTT-CAACCGGAGCCTGATTACCTCCA-ACGCTC 656
| | || | || |||| || || || ||| ||||| ||||| ||||| || || ||| |
Sbjct 712 T-TCGTAG-CAGTCTTCGATGCTGA-TTTCCAACCCGAGCCCGATTATCT-CATCCGCGC 767
Query 657 TGTCCCCTTCCTCGTTCATAACCCCGAGGTCGCTCTTGTTCAAGCCCGATGGAGATTCAT 716
|||||| ||||| || || ||||| || || ||||| |||||||||||||||| ||| |
Sbjct 768 TGTCCCTTTCCTTGTCCACAACCCTGACGTTGCTCTAGTTCAAGCCCGATGGATATTTGT 827
Query 717 GAACTCAAACAAGTGCTTGATGACGAGGATGCAAGAGATGTCCCTCAACTACCACTTCAT 776
||| | ||||| ||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 828 TAACGCGAACAAATGCTTGATGACGAGGATGCAAGAGATGTCTCTCAACTATCATTTCAA 887
Query 777 GGCGGAA-ATAGAATCTGGATCCACTAGACATGCCTTCTTTAGCTTCAATGGAACTGCGG 835
| |||| | |||||| || || ||||||||||| ||||| | || |||||||| ||||
Sbjct 888 AGTGGAACA-AGAATCAGGGTCGACTAGACATGCTTTCTTCGGGTTTAATGGAACCGCGG 946
Query 836 GTGTATGGAGAATGGACG-CAATGGAAGAAGCTGGAGGATGGCA-TGACCGGACCACTGT 893
||||||||||||| || ||||||||| ||| ||||||||| | | | ||||||| ||
Sbjct 947 GTGTATGGAGAATAT-CGGCAATGGAAGCAGCAGGAGGATGGAAATCAA-GGACCACAGT 1004
Query 894 AGAGGACATGGACTTGGCCGTTCGTGCTGGTCTTC-TCGGCTGGAAATTTGTCTTTCTCA 952
|||||||||||||||||| ||||||| |||||||| | |||||||||||||||| || |
Sbjct 1005 AGAGGACATGGACTTGGCTGTTCGTGTTGGTCTTCAT-GGCTGGAAATTTGTCTACCTTA 1063
Query 953 ATGACCTCACG 963
| |||||||||
Sbjct 1064 ACGACCTCACG 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47421034768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5