BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905723
Length=195
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 267 4e-71
> AT1G27150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:9429047-9432274 FORWARD LENGTH=1743
Length=1743
Score = 267 bits (144), Expect = 4e-71
Identities = 178/195 (91%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 1 ATGTGGTGCCAACTGCTGCCAAAGACAGGTCAATTCTCCACTGCTAAAGAAGTGATCAGA 60
||||||||||| ||||||| ||||||||| |||| |||||| || |||||||| ||||||
Sbjct 1343 ATGTGGTGCCAGCTGCTGCTAAAGACAGGCCAATCCTCCACGGCCAAAGAAGTAATCAGA 1402
Query 61 GAGAGGATAAAGGTCAGGGATGGTATTCCTTTCATGTGGCGTTTGCTGGAGAAGAGTTAC 120
|||||||| |||| ||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1403 GAGAGGATTAAGGCCAGAGATGGTATTCCTTTCATGTGGCGTTTGCTGGAGAAAAGTTAC 1462
Query 121 TCCATGGAAGGCACTGCAGAGGCTGAGAGTAGTACAGGAGAGACAGCTAAGAAACTGGAA 180
||||||||||||| ||||||||||||||||||| || |||||| |||||||||||| |||
Sbjct 1463 TCCATGGAAGGCAATGCAGAGGCTGAGAGTAGTGCACGAGAGAGAGCTAAGAAACTTGAA 1522
Query 181 TCTTGTTATATCTAA 195
||||||||| |||||
Sbjct 1523 TCTTGTTATTTCTAA 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8651832372
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5