BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905733
Length=810
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25490.1 | Symbols: | Protein kinase family protein | chr3:... 492 2e-138
AT1G21240.1 | Symbols: WAK3 | wall associated kinase 3 | chr1:7... 364 6e-100
> AT3G25490.1 | Symbols: | Protein kinase family protein | chr3:9241725-9243485
FORWARD LENGTH=1674
Length=1674
Score = 492 bits (266), Expect = 2e-138
Identities = 323/349 (93%), Gaps = 10/349 (3%)
Strand=Plus/Plus
Query 74 CAAACACCATCAGCATTTTGAGCATTGTGCGTAGCATTAGCTATATaaaaaa-aGTAATG 132
||||||||| || |||||||||| | |||||||||||||||||||||||||| | ||| |
Sbjct 113 CAAACACCACCAACATTTTGAGCCTCGTGCGTAGCATTAGCTATATAAAAAATA-TAAGG 171
Query 133 AAGCACCAGAAGGACACCAAGCTCCAACG--AA-TATTCTTTGAGAAAAATGGCGGCGAC 189
||||||||||||||||||||| ||||||| || |||||||||||||||||||||| | |
Sbjct 172 AAGCACCAGAAGGACACCAAGATCCAACGACAATTATTCTTTGAGAAAAATGGCGGTGGC 231
Query 190 ATGTTGATAGAGCGACTCTCGGAAGCAGGGTCATCAAACATTGATGTCAAAATCTTTACG 249
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 232 ATGTTGATAGAGCGACTCTCGGGGGCAGGGTCATCAAACATTGATTTCAAAATCTTTACG 291
Query 250 GAGGATGACATGAAGGAAGCAACTAATGGTTATGATGAGAGCAGAATCTTGGGTCATCAA 309
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 292 GAGGAAGACATGAAGGAAGCAACTAATGGTTATGATGTGAGCAGAATCTTGGGTCA--A- 348
Query 310 GGAGGCCAAGGGACAGTCTACAAAGGGATATTGCCAGACAACTCCATCGTTGC-AGTAAA 368
||||||||| ||||||||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct 349 GGAGGCCAATGGACAGTCTACAAAGGGATATTGCCTGACAACTCCATCGTTGCTA-TAAA 407
Query 369 GAAAACTCGGCTAGGAGACAACAATCAAGTAGAGCAGTTCATCAACGAA 417
|||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 408 GAAAACTCGGCTAGGAGACAACAACCAAGTAGAGCAGTTCATCAACGAA 456
Score = 398 bits (215), Expect = 6e-110
Identities = 263/285 (92%), Gaps = 7/285 (2%)
Strand=Plus/Plus
Query 420 CCCTTGTTGGTCTATGAATTCATTACCAGTAGCACCCTTTTCGATCACTTGCACGGTTCC 479
||||||||||||||||||||||||||| || || |||||||||||||||||||||||| |
Sbjct 529 CCCTTGTTGGTCTATGAATTCATTACCGGTGGCTCCCTTTTCGATCACTTGCACGGTT-C 587
Query 480 ATGCATGTTTGCTTCTTCTCTTACATGGGAACACCGCCTGAAGATAGCAATAGAAGTCGC 539
|||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 588 ---CATGTTTGTTTCTTCTCTTACATGGGAACACCGCCTGGAGATAGCAATAGAAGTTGC 644
Query 540 TGGAGCTATAGCATATCTTCACTCCGCTGCTTCTATTCCAATCATCCATCGCGATGTCAA 599
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 645 TGGAGCTATAGCGTATCTTCACTCCGGTGCTTCTATTCCAATCATCCATCGCGATATCAA 704
Query 600 AACTGAAAATATTCTCCTGGATGAAAACTTAACTGCAAAAATAGCTGACTTTGGCGGTTC 659
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 705 AACTGAAAATATTCTCTTGGATGAAAACTTAACTGCAAAAGTAGCTGACTTTGGCGCTTC 764
Query 660 AAAGTTGATGCCAATGGATAAAGAGCAGTTCAC-AGCTATGAGTG 703
|||||||| ||||||||||||||| ||| |||| | ||||| |||
Sbjct 765 AAAGTTGAAGCCAATGGATAAAGAACAGCTCACCA-CTATG-GTG 807
Score = 163 bits (88), Expect = 2e-39
Identities = 100/106 (94%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 705 ACACTTGCTTGGTAGTAACATCGTGTTTGCACAAGGCCATACCAGTAGCCGTGGTTATGA 764
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1197 ACACTTGCTTGGTAGTAACATCGTGTCAGCACAAGGCCATACCAGTAGCCGTGGTTATGA 1256
Query 765 CAGCATCAAGAATGTAGCAACGTTTGACATTGAAGCTGGTCGCTGA 810
|| || |||||||||||||| |||||||||||||||||| ||||||
Sbjct 1257 CAACAACAAGAATGTAGCAAGGTTTGACATTGAAGCTGGCCGCTGA 1302
> AT1G21240.1 | Symbols: WAK3 | wall associated kinase 3 | chr1:7434303-7436830
FORWARD LENGTH=2354
Length=2354
Score = 364 bits (197), Expect = 6e-100
Identities = 262/292 (90%), Gaps = 10/292 (3%)
Strand=Plus/Plus
Query 415 GAA-TCCCCTTGTTGGTCTATGAATTCATTACCAGTAGCACCCTTTTCGATCACTTGCAC 473
||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1444 GAAGTCCCCTTGTTGGTCTATGAATTCATTACCAATGGCACCCTTTTCGATCACTTGCAC 1503
Query 474 GGTTCCATGCATGTTTGCTTCTTCTCTTACATGGGAACACCGCCTGAAGA-TAGCAATAG 532
|||||||| | |||| ||||||||||||||||||||||||||| | || |||| ||||
Sbjct 1504 GGTTCCAT---T-TTTGATTCTTCTCTTACATGGGAACACCGCCTCA-GAATAGCGATAG 1558
Query 533 AAGTCGCTGGAGCTATAGCATATCTTCACTCCGCTGCTTCTATTCCAATCATCCATCGCG 592
||||||||||| || | || |||||||||||| |||||||||||||||||||||||||||
Sbjct 1559 AAGTCGCTGGAACTCTTGCTTATCTTCACTCCTCTGCTTCTATTCCAATCATCCATCGCG 1618
Query 593 ATGTCAAAACTGAAAATATTCTCCTGGATGAAAACTTAACTGCAAAAATAGCTGACTTTG 652
|| ||||||||| |||||||||| ||||||||||||||||||||||| |||| |||||||
Sbjct 1619 ATATCAAAACTGCAAATATTCTCTTGGATGAAAACTTAACTGCAAAAGTAGCCGACTTTG 1678
Query 653 GCGGTTCAAAG-TTGATGCCAATGGATAAAGAGCAGTTCACAGCTATGAGTG 703
||| ||| ||| || || |||||||||||||||||| ||||| ||||| |||
Sbjct 1679 GCGCTTCTAAGCTT-ATACCAATGGATAAAGAGCAGCTCACAACTATG-GTG 1728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39433805395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5