BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905744

Length=1011
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G38590.2 | Symbols: BGAL14 | beta-galactosidase 14 | chr4:18...   431    7e-120
  ATCG00340.1 | Symbols: PSAB | Photosystem I, PsaA/PsaB protein ...  89.8    5e-17 


> AT4G38590.2 | Symbols: BGAL14 | beta-galactosidase 14 | chr4:18036116-18040928 
FORWARD LENGTH=3159
Length=3159

 Score =  431 bits (233),  Expect = 7e-120
 Identities = 275/296 (93%), Gaps = 0/296 (0%)
 Strand=Plus/Plus

Query  357   GGTGTACATAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAATATGGTGAACATAAGCC  416
             |||||||| |||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct  1812  GGTGTACACAGAGGAAGGATCTAAGAAGGTGAAATGGGAGAAAGATGGTAAACGTAAGCC  1871

Query  417   TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAAGGAGAGAACGCGGTCGCCATTAG  476
             |||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||
Sbjct  1872  TCTTACGTGGTACAAGACCTACTTTGAGACACCAGAGGGAGTGAACGCGGTCGCGATTAG  1931

Query  477   GATGAAAGGAATGGGAAAGGGATTGATTTGGGTTCATGGAATTGGCGTAGGGAGATACTG  536
             |||||||| |||||| |||||||||||||||||| |||||||||||||||||||||| ||
Sbjct  1932  GATGAAAGCAATGGGGAAGGGATTGATTTGGGTTAATGGAATTGGCGTAGGGAGATATTG  1991

Query  537   GATGTCATTCGTTTCTCCACTCGGAGAGCCAATTCAAACGGAGTACCATATACCAAGATC  596
             |||||| ||| |||||||||| |||||||||| ||||||||||||||||||||| |||||
Sbjct  1992  GATGTCTTTCCTTTCTCCACTGGGAGAGCCAACTCAAACGGAGTACCATATACCGAGATC  2051

Query  597   TTTCATGAAGGAGGAGAAGAAGAAGAGCATGTTTGTGATTCTCGAGGAAGAGCCAG  652
             ||||||||||| |||||||||||||| |||| | ||||||||||||||||| ||||
Sbjct  2052  TTTCATGAAGGGGGAGAAGAAGAAGAACATGCTGGTGATTCTCGAGGAAGAACCAG  2107


 Score =  159 bits (86),  Expect = 4e-38
 Identities = 105/114 (92%), Gaps = 2/114 (2%)
 Strand=Plus/Plus

Query  246   AGACAGTGGATCATACATGGAACACACGTATGCCGGTCCACGTGGC-GTTTCAATCATCG  304
             |||||||||||||||||||||||||| || ||| ||||||||| ||  ||||||||||||
Sbjct  1674  AGACAGTGGATCATACATGGAACACAGGTTTGCTGGTCCACGT-GCTATTTCAATCATCG  1732

Query  305   GTTTAAAGTCAGGAACGCGAGATTTGATAGAGAACAATGAATGGGGACATTTGG  358
             |||||||||||||||||||||||||||  |||||||||||||||||||| ||||
Sbjct  1733  GTTTAAAGTCAGGAACGCGAGATTTGACCGAGAACAATGAATGGGGACACTTGG  1786


> ATCG00340.1 | Symbols: PSAB | Photosystem I, PsaA/PsaB protein 
| chrC:37375-39579 REVERSE LENGTH=2205
Length=2205

 Score = 89.8 bits (48),  Expect = 5e-17
 Identities = 53/55 (96%), Gaps = 1/55 (2%)
 Strand=Plus/Plus

Query  778   AGTTTTCCTTGCGATGGTCCGGGACGAGGTGGTACTTGTGATATTTCGA-TTGGG  831
             ||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct  1666  AGTTTTCCTTGCGATGGTCCGGGACGAGGTGGTACTTGTGATATTTCGGCTTGGG  1720



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 49530868942


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5