BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905753
Length=378
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14160.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 292 1e-78
> AT2G14160.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:5976465-5976801 REVERSE LENGTH=258
Length=258
Score = 292 bits (158), Expect = 1e-78
Identities = 235/269 (87%), Gaps = 18/269 (7%)
Strand=Plus/Plus
Query 1 ATGGCGTCCACAAATGTTGAATTCACTTGCTATGTTGGCAATTTGGAGTCAGACACAGAA 60
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCTTCCACAAATGTTGAATTCACGTGCTATGTTGGCAATTTGGAGTCGGACACAGAA 60
Query 61 GAAAATGATCTTGAGAATGCATTTTCTCAGTTTGGCGACGTTATAGC-TTCTAATGTCAT 119
|||||||||||| |||||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 61 GAAAATGATCTTAAGAATGCATTTTCTCAGTTTGGTGACGTTATA-CATTCTAATGTCAT 119
Query 120 TCGCGAAAGAGATTACGAAAGTGATAATGAGTATTATGATTCTGAAGACGACTACGAATG 179
| |||||||||||| | || ||| | | || ||||| |||| ||| ||||||||
Sbjct 120 TTGCGAAAGAGATT-----A-TG--AAT-A-T-TT-TGATTATGAAAACGGCTACGAATA 167
Query 180 TGAGAGTT-CAGTCTAC-ATGACAACGAGGAAGGTATATGGATTTGTTAGTTTTAAAGAT 237
||| || | |||| | |||||||||||||||||||||||||||||||||| ||||||
Sbjct 168 TGA-CCTTCCGGTCT-CTGTGACAACGAGGAAGGTATATGGATTTGTTAGTTTCAAAGAT 225
Query 238 GAGAAATCAATGAAGGATGCCGTTAAGGG 266
||||||||||||||||||||| |||||||
Sbjct 226 GAGAAATCAATGAAGGATGCCATTAAGGG 254
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17794783146
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5