BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905755

Length=459
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G14170.1 | Symbols: ALDH6B2 | aldehyde dehydrogenase  6B2 | ...   558    1e-158


> AT2G14170.1 | Symbols: ALDH6B2 | aldehyde dehydrogenase  6B2 
| chr2:5977356-5981899 REVERSE LENGTH=2195
Length=2195

 Score =  558 bits (302),  Expect = 1e-158
 Identities = 375/407 (92%), Gaps = 18/407 (4%)
 Strand=Plus/Plus

Query  1     CAGTCAAATATGGGGGCAAAAAATCATGGACTTGTCTTACCTGATGCCAACATAGATGCA  60
             ||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct  1063  CAGTCAAATATGGGGGCGAAAAATCATGGACTTGTCTTGCCTGATGCCAACATCGATGCA  1122

Query  61    ACTTTAAATGCGCTACTTGCTGCTGGGTTTGGTGCCGCTGGACAGAGATGCATGGCACTG  120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1123  ACTTTAAATGCGCTACTTGCTGCTGGGTTTGGTGCCGCTGGACAGAGATGCATGGCACTG  1182

Query  121   AGTACAGTGGTTTTTGTTGGGGATTCAAAATCATGGGAGGATAAACTCGTTGAGCGAGCG  180
             |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| 
Sbjct  1183  AGTACAGTGGTTTTTGTTGGCGATGCAAAATCATGGGAGGATAAACTCGTTGAGCGAGCT  1242

Query  181   AAAGCCCTTAAAGTCACATGTGGGTCAAAACCAGATGCAGACCTGGGTCCTGTGATTAGT  240
             || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1243  AAGGCCCTTAAAGTCACATGTGGGTCAGAACCAGATGCAGACCTGGGTCCTGTGATTAGT  1302

Query  241   AAACAG-CG------C---T-TG-------ATTCAGTTTGGTGTAGATGATGGTGCTAAA  282
             |||||| ||      |   | ||       ||||||| ||||||||||||||||||||||
Sbjct  1303  AAACAGGCGAAAGAACGGATATGCCGGTTGATTCAGTCTGGTGTAGATGATGGTGCTAAA  1362

Query  283   TTGCTGCTTGACGGAAGAGATATTGTGGTTCCAGGATACGAGAAAGGGAATTTTATCGGT  342
             |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  1363  TTGCTGCTTGACGGAAGAGATATTGTGGTTCCAGGATATGAGAAAGGGAATTTTATCGGT  1422

Query  343   CCTACAATTTTATATGGTGTTACCCCAGACATGGAGTGCTACAAGGA  389
             ||||| ||| ||| |||||||||||||||||||||||| ||||||||
Sbjct  1423  CCTACCATTCTATCTGGTGTTACCCCAGACATGGAGTGTTACAAGGA  1469



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21866470815


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5