BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905784
Length=1110
Score E
Sequences producing significant alignments: (Bits) Value
AT2G04440.1 | Symbols: | MutT/nudix family protein | chr2:1541... 614 7e-175
AT2G04430.1 | Symbols: atnudt5, NUDT5 | nudix hydrolase homolog... 603 2e-171
AT2G04450.1 | Symbols: ATNUDT6, NUDX6, ATNUDX6, NUDT6 | nudix h... 584 5e-166
> AT2G04440.1 | Symbols: | MutT/nudix family protein | chr2:1541511-1542729
FORWARD LENGTH=660
Length=660
Score = 614 bits (332), Expect = 7e-175
Identities = 403/437 (92%), Gaps = 6/437 (1%)
Strand=Plus/Plus
Query 227 GCATGGACGGTGAAGCTCAACCGATCGCTTTACTTAATGGAAAAGAAGATAGATATGGCG 286
|||||||| ||||||| |||| |||| ||||||||| |||||||||||||||||| |||
Sbjct 11 GCATGGACAGTGAAGCACAACAGATCTCTTTACTTATTGGAAAAGAAGATAGATACGGCC 70
Query 287 GTGTTGAAGTCAACTTAATGGAAGTTGAACCCATGACTGCTGAAGAGTTTT-ATGCAAAG 345
|||||||||| ||| | ||||||||||||||||||| ||||||||| |||| ||||||||
Sbjct 71 GTGTTGAAGTAAACCTGATGGAAGTTGAACCCATGAATGCTGAAGA-TTTTAATGCAAAG 129
Query 346 CTTGACGTTTC-TCTTAAGGCATGGAAGGATCAGGGGAAAAAGGGAATTTGGATAAAGCT 404
||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 130 CTTGACGTTTCAT-TTAAGGCATGGAAGGATCAGGGGAAAAAAGGAATTTGGATAAAGCT 188
Query 405 GCCTTGTGAGCTTTTAAGTCTTGTTGACATTGCAATTAAGAAAGGGTTTACATACCACCA 464
||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 189 TCCTTGTGAGCTTTCGAGTCTTGTTGACATTGCAATGAAGAAAGGGTTTACGTACCACCA 248
Query 465 TGCCGAGAAGGAATATGCGGTTCTTACATCTTGGATCTCTGACTTGCCTAGCACTATTCC 524
||||||||| ||||||||||| |||| ||||||||||| |||||||||| |||||||||
Sbjct 249 TGCCGAGAATGAATATGCGGTGCTTAGTTCTTGGATCTCCGACTTGCCTAACACTATTCC 308
Query 525 TGCCAATGCTTCTCATCGTATTGGGATTGGTGCTCTTGTACTAAACAAGAACAGAGAGGT 584
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 309 TGCCAATGCTTCTCATCGTATTGGCATCGGTGCTCTTGTCCTAAACAAGAACAGAGAGGT 368
Query 585 GCTTG-TGGTTCAGGAGATTGATGGTGTTTTCAAAGGTACCGGACTGTGGAAGCTTCCTA 643
||||| | ||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 369 GCTTGCT-GTTCAGGAGATCGATGGTGTTTTCAAAGATACCGGACTGTGGAAGCTTCCTA 427
Query 644 CCGGTGTTATTCAAGAG 660
|||||||||||||||||
Sbjct 428 CCGGTGTTATTCAAGAG 444
Score = 235 bits (127), Expect = 6e-61
Identities = 185/211 (88%), Gaps = 11/211 (5%)
Strand=Plus/Plus
Query 899 AGAACAGAGAGAACTTCAGGTACATGGCTAACATTTGCTTGAAGAGGTCTCG-G-GA-GG 955
|||||||||||||||||||||||||||||||||| |||||||||||||||| | || ||
Sbjct 443 AGAACAGAGAGAACTTCAGGTACATGGCTAACATCTGCTTGAAGAGGTCTCAAGAGAAGG 502
Query 956 AGTACTTAGGTTTCTCCACTGTCCTTACTAAGAATTTAACTGGTAAGGAGAGCTATCTTT 1015
|||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||
Sbjct 503 AGTACTTAGGTTTCTCCAATGTCCTTACCAAGAATTCAACTGGTAAGGAGAGCTATCTTT 562
Query 1016 ACTGCAACACGG-CC--G---ACTTCCTCAACGGAAAGCTTGACCAT-GCTTCTACGTCT 1068
|||||| ||| | || | |||| ||||| ||||||| ||| ||| | |||||| ||
Sbjct 563 ACTGCAGCACCGACCACGCGTACTTTCTCAAAGGAAAGCCTGATCATAG-TTCTACTTCA 621
Query 1069 CTCTTCACAACTCTCTTCAGAAAGTGTTTCT 1099
|||||||||||||| || |||||||||||||
Sbjct 622 CTCTTCACAACTCTTTTGAGAAAGTGTTTCT 652
> AT2G04430.1 | Symbols: atnudt5, NUDT5 | nudix hydrolase homolog
5 | chr2:1538901-1541094 FORWARD LENGTH=1019
Length=1019
Score = 603 bits (326), Expect = 2e-171
Identities = 620/757 (82%), Gaps = 40/757 (5%)
Strand=Plus/Plus
Query 227 GCATGGACGGTGAAGCTCAACCGATCGCTTTACTTAATGGAAAAGAAGATAGATATGGCG 286
||||||||||||||||| ||| | |||||| ||||| ||||||| |||| ||| |
Sbjct 99 GCATGGACGGTGAAGCTTTTGAAATCTCATTACTTGATGGAGAAGAAGACAGATTTGGAG 158
Query 287 GTGTTGAAGTCAACTTAATGGAAGTTGAACCCATGACTGCTGAAGAGTTTT-ATGCAAAG 345
|| || || ||||| |||||||| ||| |||||||| || || |||| || |||||
Sbjct 159 GTACTGTGGTGAACTTGATGGAAGTGGAATCCATGACTATTGGTGA-TTTTGATTCAAAG 217
Query 346 CTTGACGTTTCTCTTAAGGCATGGAAGGATCAGGGGAAAAAGGGAATTTGGATAAAGCTG 405
||||| ||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||
Sbjct 218 CTTGATGTTTCACTTAAGGCTTGGAAGGATCAGGGGAAGAAGGGGATTTGGATAAAGCTG 277
Query 406 CCTTGTGAGCT-TTTAAGTCTTGTTGACATTGCAATTAAGAAAGGGTTTACATACCACCA 464
||| ||||||| | | ||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 278 CCTAGTGAGCTATCT-AGTCTTGTTGATACTGCAATTAAGAAAGGGTTTACATACCACCA 336
Query 465 TGCCGAGAAGGAATATGCGGTTCTTACATCTTGGATCTCT-GA-CTTGCCTAGCACTATT 522
||||||||| || |||| | | ||||||| |||| | || || | ||||||||| ||
Sbjct 337 TGCCGAGAATGAGTATGTGATGCTTACATTTTGGCT-TCCAGAGCCA-CCTAGCACTCTT 394
Query 523 CCT-GCCAATGCTTCTCATCGTATTGGGATTGGTGCTCTTGTACTAAACAAGAACAGAGA 581
||| || ||||||||||||||||||||||| |||||| |||| |||||||||||| ||||
Sbjct 395 CCTTGC-AATGCTTCTCATCGTATTGGGATCGGTGCTTTTGTCCTAAACAAGAACGGAGA 453
Query 582 GGTGCTTGTGGTTCAGGAGATT-GATGG-TGTTTTCAAAGGTACCGGACTGT--GGAAGC 637
| |||||||||||||||||| | | ||| | ||| ||||| || | ||| |||||
Sbjct 454 GATGCTTGTGGTTCAGGAGAATAG-TGGATATTT-CAAAGATAAAA-A-TGTCTGGAAGG 509
Query 638 TTCCTACCGGTGTTATTCAAGAGGGTGAGGGTATTTGGGCTGGAGCAGTTAGGGAAGTAA 697
| ||||||||| |||| ||||||||||| |||| ||||||||||||||||||||||| |
Sbjct 510 TGCCTACCGGTACTATTAAAGAGGGTGAGAGTATCTGGGCTGGAGCAGTTAGGGAAGTGA 569
Query 698 AAGAAGAAACTGGTATTGA-GACAAAATTTGTTGAAGTCTTGGCTTTTGGGGAAAGTCAC 756
|||||||||||| |||||| | || | ||||| ||||||||| |||| ||||||||||
Sbjct 570 AAGAAGAAACTGATATTGATG-CAGAGTTTGTAGAAGTCTTGTCTTTCATGGAAAGTCAC 628
Query 757 CAATCATTCTTGG-AAAGAAAAACGGATATATATTTTC-TATGTGAGTTAGAACCAAGCA 814
||| || | | || |||||||||||||||||| ||||| | || ||||| ||| |||| |
Sbjct 629 CAAGCAGTGT-GGCAAAGAAAAACGGATATAT-TTTTCGTCTGCGAGTTGGAAGCAAGAA 686
Query 815 CATTTGAAATCAAGAAACAAGACTCTGAGATCC-TGGATGCTAAGTGGATGCCGATTGAG 873
| ||||||||| |||||||||| |||||||||| || |||||||||||||||| |||||
Sbjct 687 CTTTTGAAATCCAGAAACAAGATTCTGAGATCCATGC-TGCTAAGTGGATGCCGGTTGAG 745
Query 874 GAATACGTAAAGCAACCTTTTATCCAGAACA-G-AGAG-AAC----T-T-CAGGT-ACAT 923
||||||||||| ||||| | ||| | |||| | || | ||| | | || || | ||
Sbjct 746 GAATACGTAAACCAACCCT--ATC-ACAACAAGGAGGGGAACGAGATGTTCAAGTTA-AT 801
Query 924 GGCTAACATTTGCTTGAAGAGGTCTCGGGAGGAGTAC 960
|||||||| ||||| || ||||| |||||| |||||
Sbjct 802 AGCTAACATCTGCTTAAAAAGGTCGCGGGAGAAGTAC 838
> AT2G04450.1 | Symbols: ATNUDT6, NUDX6, ATNUDX6, NUDT6 | nudix
hydrolase homolog 6 | chr2:1543320-1545462 FORWARD LENGTH=1311
Length=1311
Score = 584 bits (316), Expect = 5e-166
Identities = 618/758 (82%), Gaps = 43/758 (6%)
Strand=Plus/Plus
Query 374 ATCAGGGGAAAAAGGGAATTTGGATAAAGC-TGCCTTG-TGAGCTTTTA-AGTCTTGTTG 430
||||||||| ||||| || ||| |||||| |||| | || || || | | |||| |||
Sbjct 456 ATCAGGGGACGAAGGGGATATGGTTAAAGCTTGCC--GATGGGC-TTGACAATCTTATTG 512
Query 431 ACA-TTGCAATTAAG-A-AAGGGTTTACATACCACCATGCCGAGAAGGAATATGCGGTTC 487
|| ||||| ||| | |||||||| | |||||||||||||| |||||| | | |
Sbjct 513 -CACCTGCAA--AAGCAGAAGGGTTTGTGTGCCACCATGCCGAGAGGGAATACACCATGC 569
Query 488 TTACATCTTGGATCTCTGACT-TGCCTAGCACTATTCCTGCCAATGCTTCTCATCGTATT 546
|||||||||||||| |||| | | ||||| ||| ||||||||||||| ||||||||||||
Sbjct 570 TTACATCTTGGATCGCTGA-TGTTCCTAGTACTCTTCCTGCCAATGCGTCTCATCGTATT 628
Query 547 GGGA-TTGGTG-CTCTTGTACTAAACAAG-A-A-CAGAGAGGTGCTTGTGGTTCAGGAGA 601
||| |||||| || |||| ||||||||| | | || ||||||||||||||| |||||||
Sbjct 629 -GGAGTTGGTGCCT-TTGTCCTAAACAAGAAGACCAAAGAGGTGCTTGTGGTCCAGGAGA 686
Query 602 TTGATGGTGTTTTCAAAGGTACCGGACTGTGGAAGCTTCCTACCGGTGTTATTCAAGAGG 661
|||||||| |||||||||||| ||| ||||||| || |||||||||||| || ||||||
Sbjct 687 TTGATGGTCATTTCAAAGGTACAGGAGTGTGGAAACTGCCTACCGGTGTTGTTAAAGAGG 746
Query 662 GTGAGGGTATTTGGGCTGGAGCAGTTAGGGAAGTAAAAGAAGAAACTGGTATTGAGACAA 721
||||| |||||||| |||||| |||||||||| ||||||||||||||||| ||||||
Sbjct 747 GTGAGAATATTTGGGAAGGAGCACTTAGGGAAGTGGAAGAAGAAACTGGTATTAAGACAA 806
Query 722 AATTTGTTGAAGTCTTGGCTTTTGGGGAAAGTCACCAATCATTCTTGGAAAGAAAAACGG 781
||||||| |||||| ||||||| ||||||| |||||| |||||||||||| ||||||||
Sbjct 807 AATTTGTAGAAGTCCTGGCTTTCAGGGAAAGCCACCAAGCATTCTTGGAAATAAAAACGG 866
Query 782 ATATATATTTT-CTATGTGAGTTAGAACCAAGCACATTTGAAATCAAGAAACAAGACTCT 840
|||||| |||| || |||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 867 ATATAT-TTTTCCTCTGTGAGTTAGAACCAACCACTTTTGAAATCAAGAAACAAGACTCT 925
Query 841 GAGATCCTGGATGCTAAGTGGATGCCGATTGAGGAATACGTAAAGCAACCTTTTATCCAG 900
|||||| | | ||||||||||||||| ||||| ||||||||||| ||||| | | ||||
Sbjct 926 GAGATCTTAGCTGCTAAGTGGATGCCAATTGAAGAATACGTAAACCAACCCTGGAACCAG 985
Query 901 AACAGAGAGAACT-TC-AGGTACATGGCTAACATTTGCTTGAAGAGGTCT-C-GG-GA-G 954
|| | | |||||| | |||| |||||| ||||| ||||||||||| | | | || || |
Sbjct 986 AAGA-A-AGAACTGTTTAGGTTCATGGCGAACATCTGCTTGAAGAGAT-TGCAGGAGATG 1042
Query 955 GAGTACTTAGGTTTCTCCACTGTCCTTACTAAGAATTTAACTGGTAAGGAGAGCTATCTT 1014
|| ||| | |||||||||| |||||||||| || || | |||| || ||||||||||||
Sbjct 1043 GAATACATGGGTTTCTCCAAAGTCCTTACTACGACTTCATCTGGGAAAGAGAGCTATCTT 1102
Query 1015 TACTGCAACACGG--C-CG--A-CTTCCTCAACGGAAAGCTTGACC-ATGCTTCTACGTC 1067
||||||||||| | | || | | ||||||||| || || || || | || || || ||
Sbjct 1103 TACTGCAACACCGATCACGCCAACCTCCTCAACGCAACGCGTGGCCTA-GCCTCCACCTC 1161
Query 1068 TCTCTTCACAA-CTCT-CTTCAGAAAGTGTTTCTGTTT 1103
| || | || | || |||||||| |||||| |||||
Sbjct 1162 TGG-TTGAAAAACCCTTCTTCAGAACGTGTTTATGTTT 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54417390780
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5