BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg905790
Length=549
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19740.1 | Symbols: | ATP-dependent protease La (LON) domai... 826 0.0
AT1G75460.1 | Symbols: | ATP-dependent protease La (LON) domai... 412 1e-114
> AT1G19740.1 | Symbols: | ATP-dependent protease La (LON) domain
protein | chr1:6824322-6825459 FORWARD LENGTH=1138
Length=1138
Score = 826 bits (447), Expect = 0.0
Identities = 513/545 (94%), Gaps = 4/545 (1%)
Strand=Plus/Plus
Query 7 CACCACAACGCGAATCCGCCCAAATCAGATGACCTAGTAGAGCTTCCTCTCTTCCCACTA 66
||| ||||||||||||| ||||||||||||||| |||| ||||||||||| || ||||||
Sbjct 246 CACAACAACGCGAATCCACCCAAATCAGATGACTTAGTCGAGCTTCCTCTATTTCCACTA 305
Query 67 CCTCTCGTTCTCTTCCCCGGCGCAACAATCCCGCTTCAGATTTTTGAGTTCCGTTACCGA 126
||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||
Sbjct 306 CCTCTCGTTCTCTTCCCAGGCGCAACAATCCCGCTTCAGATCTTCGAGTTTCGTTACCGA 365
Query 127 GTCATGATGCAAACGCTTCTCCAATCCGATCTCAGATTCGGCGTTGTCTACTCCGACGCT 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 GTCATGATGCAAACGCTTCTCCAATCCGATCTCAGATTCGGCGTTGTCTACTCCGACGCT 425
Query 187 GTTTCAGGTTCTGTAGCTGGAATCGGTTACGTCGGAGAAATCGTGAAGCACGAGCGTCTC 246
|||||||| || | |||||||||||| | |||||||||||||||||| |||||||||||
Sbjct 426 GTTTCAGGCTCCGCAGCTGGAATCGGATGCGTCGGAGAAATCGTGAAACACGAGCGTCTA 485
Query 247 GTCGATGATCGATTCTTCTTAATCTGTAAAGGTCAGGAACAATTTCGCA-TCACGGATCT 305
||||| |||||||||||||||||||||||||||||||||| ||| || | |||| |||||
Sbjct 486 GTCGACGATCGATTCTTCTTAATCTGTAAAGGTCAGGAACGATTCCG-AGTCACCGATCT 544
Query 306 CGTCCGTACGAAACCTTACCTCGTCGCGAAAGTGACGTGGCTTGAAGATCGACCGTCCGG 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 CGTCCGTACGAAACCTTACCTCGTCGCGAAAGTGACGTGGCTTGAAGATCGACCGTCCGG 604
Query 366 TGAAGAGAATCTGGACGAATTGGCGAACGAGGTTGAGGCTT-TGATGAAAGAAGTGATTC 424
||||||||||||||||||||||||||| || ||||||| || ||||||||||||||||||
Sbjct 605 TGAAGAGAATCTGGACGAATTGGCGAATGAAGTTGAGG-TTCTGATGAAAGAAGTGATTC 663
Query 425 GATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCAGGATCTGAGGAAGAATC 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 GATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCAGGATCTGAGGAAGAATC 723
Query 485 AGTTTCCGACTCCGTTCTCGTTTTTTGTTGGTAGCACGTTTGAAGGAGCTCCAATGGAGC 544
|||||||||||||||||||||| || || || |||||||||||||||||||| |||||||
Sbjct 724 AGTTTCCGACTCCGTTCTCGTTCTTCGTCGGAAGCACGTTTGAAGGAGCTCCGATGGAGC 783
Query 545 AGCAA 549
|||||
Sbjct 784 AGCAA 788
> AT1G75460.1 | Symbols: | ATP-dependent protease La (LON) domain
protein | chr1:28327886-28329764 FORWARD LENGTH=1879
Length=1879
Score = 412 bits (223), Expect = 1e-114
Identities = 452/560 (81%), Gaps = 26/560 (5%)
Strand=Plus/Plus
Query 3 GAAGCACCACAACGCG-AATCCGCCCAAATCAGATGACCTAGTAGAGCTTCCTCTCTTCC 61
|||||| ||||||||| ||| | || ||||| ||||| | || ||||||||||| || |
Sbjct 268 GAAGCATCACAACGCGAAAT-CTCCAAAATCCGATGATATCGTCGAGCTTCCTCTGTTTC 326
Query 62 CACTACCTCTCGTTCTCTTCCCCGGCGCAA-CAATCCCGCTTCAGATTTTTGAGTTCCGT 120
|||| || ||||||||||||||||| |||| | | || |||||||| || || ||||||
Sbjct 327 CACTCCCACTCGTTCTCTTCCCCGGAGCAATC-CTTCCTCTTCAGATCTTCGAATTCCGT 385
Query 121 TACCG-AGTCATGATGCAAACGCTTCTCCAATCCGATCTCA-GATTCGGCGTTGTCTACT 178
||||| | |||||||||| ||||| |||||||| ||||| | |||||||||| || ||||
Sbjct 386 TACCGTA-TCATGATGCACACGCTCCTCCAATCTGATCT-ACGATTCGGCGTAGTTTACT 443
Query 179 CCGACGCTGTTTCAGGTTCTGTAGCTGGAA-TCGGTTACGTCGGAGAAATCGTGAAGCAC 237
|||| | || || || || | || ||| | || | || |||||| ||||||| |||
Sbjct 444 CCGATTCCGTCTCTGGCTCCGCCGC-AGAAGTAGGATGTGTAGGAGAAGTCGTGAAACAC 502
Query 238 GAGCGTCTCGTCGATGATCGATTCTT-CTTAATCTGTAAAGGTCAGGAACAATTTCGCA- 295
|||||||||||||||||||||||||| || | |||| |||||||| |||| ||| || |
Sbjct 503 GAGCGTCTCGTCGATGATCGATTCTTTCT-AGTCTGCAAAGGTCAAGAACGATTCCG-AG 560
Query 296 TCACGGATCTCGTCCGTACGAAACCTTACCTCGTCGCGA-AAGTGACGTGGCTTGAAGAT 354
||||| || |||| ||||||||||| ||||| |||| || |||| |||||||||||||||
Sbjct 561 TCACGAATGTCGTTCGTACGAAACCCTACCTTGTCG-GAGAAGTCACGTGGCTTGAAGAT 619
Query 355 CGACCGTCCGGTGAAGAGAATCTGGA--CGAATTGGCGAACGAGGTTGAGGCTT-TGATG 411
|| || ||||||||||| ||||| || || || || || || || || | || | |||
Sbjct 620 CGTCCTTCCGGTGAAGAAAATCTTGATTCG--TTAGCTAATGAAGTCGAAG-TTCTAATG 676
Query 412 AAAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAA-TCTCAGGA 470
|||||||||||| | || ||||||||||||||||| || | || || ||| | ||| ||
Sbjct 677 AAAGAAGTGATTAGGTTATCGAATAGATTGAATGGTAAGGCTGAGAAAGAAGT-TCAAGA 735
Query 471 TCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTTTTTGTTGGTAGCACGTTTGAAGG 530
|||||||| ||||||||||||||| ||||| ||||| || || || || |||||||||||
Sbjct 736 TCTGAGGAGGAATCAGTTTCCGACGCCGTTTTCGTTCTTCGTCGGAAGTACGTTTGAAGG 795
Query 531 AGCTCCAATG-GAGCAGCAA 549
|||||| | | |||||||||
Sbjct 796 AGCTCCTA-GAGAGCAGCAA 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26322693028
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5