BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905795

Length=258
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G12940.1 | Symbols: ATNRT2.5, NRT2.5 | nitrate transporter2....   189    1e-47


> AT1G12940.1 | Symbols: ATNRT2.5, NRT2.5 | nitrate transporter2.5 
| chr1:4416405-4418590 FORWARD LENGTH=1762
Length=1762

 Score =  189 bits (102),  Expect = 1e-47
 Identities = 112/117 (96%), Gaps = 0/117 (0%)
 Strand=Plus/Plus

Query  142  GCTAACGGAATCGAGGCCGGGTGGGGTAACCTCGGAGGAGGTGCGACGCAGCTGATCATG  201
            |||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  505  GCTAACGGAATCGCCGCCGGGTGGGGTAACCTCGGAGGAGGCGCGACGCAGCTGATCATG  564

Query  202  CCCATCGTGTTCTCGTTGATTCGGAATATGGGAGCCACCAAGTTCACGGCGTGGAGG  258
            ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct  565  CCCATCGTGTTCTCGTTGATTCGTAATATGGGAGCCACCAAGTTCACCGCGTGGAGG  621



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11762653266


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5