BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg905805

Length=198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G21460.1 | Symbols:  | Ribosomal protein S24/S35, mitochondr...   163    5e-40


> AT4G21460.1 | Symbols:  | Ribosomal protein S24/S35, mitochondrial 
| chr4:11428510-11430732 FORWARD LENGTH=1610
Length=1610

 Score =  163 bits (88),  Expect = 5e-40
 Identities = 104/112 (93%), Gaps = 0/112 (0%)
 Strand=Plus/Plus

Query  49    ACCAGCGAGAGGTTTGAACACCGAGAAGAAAACAGGAAAGATTGGTTAACAACTCTTTAC  108
             ||| ||||||||||||||||||||||||||||||||||||| || || | ||||||||||
Sbjct  1056  ACCTGCGAGAGGTTTGAACACCGAGAAGAAAACAGGAAAGACTGCTTGAGAACTCTTTAC  1115

Query  109   GGGTTGATAGAGGAAGCTGGGAAAGCCAACAAGATCCCTGAGGACATGAGAA  160
             |||||||||||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct  1116  GGGTTGATAGAGGAAGCTGGGAAAGCCAACAAGATCGCTGAAGACATAAGAA  1167



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8802736425


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5